Array 1 48-440 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHUE01000001.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 19470 SEEN470_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 109 29 100.0 32 ............................. CTCCCCCGCCTGATAATTACGCCATCTGCAAT 170 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 231 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 292 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 353 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 413 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGGTAGTGCAACGCCGGTGATTTTACCAGTATCAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGGCTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17110-18236 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHUE01000001.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 19470 SEEN470_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17110 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 17171 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 17232 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 17293 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 17354 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 17415 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 17476 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 17537 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 17598 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 17659 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 17720 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 17781 29 100.0 31 ............................. AAAAATCCCGCTGACAATATTTTGCCACCTC 17841 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 17902 29 100.0 32 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCAT 17963 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 18024 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 18085 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 18146 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 18207 29 96.6 0 ......G...................... | A [18234] ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 865-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHUE01000010.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 19470 SEEN470_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 864 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 803 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 742 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 681 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 620 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 559 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 498 29 100.0 32 ............................. TAACCATGGCTAAGAAAAAAACTTACAGGACT 437 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 376 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 315 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 254 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 193 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 132 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GGGCGCCCGCGTTTCTCGGCTCGGCGCAATATCGTGTTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //