Array 1 17539-19906 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB453854.1 Vibrio cholerae HC-78A1 vcoHC78A1.contig.130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17539 28 100.0 32 ............................ ATCGTCGTTTATTACGTAGGTCGTTGGCAAGA 17599 28 100.0 32 ............................ AACAAATACAGTCTCAATCTAACATTCTTCGG 17659 28 100.0 33 ............................ ACGAAAAGGTAAAGTTGCTAGCGGACAATGTTC 17720 28 100.0 32 ............................ TGTAAGCCCCATCGATAACATCGATGTGTTCC 17780 28 100.0 32 ............................ ATTACGACCGTTGGCCAGATGACATTGATGGT 17840 28 100.0 32 ............................ ACAGCAAGCCACGCTAGCCGGGGTGAGTGAAG 17900 28 100.0 32 ............................ ACCATGATTATGGCAAGGACAGCTACTATTCC 17960 28 100.0 32 ............................ AAGCAGCTTTAGCACTCGCAGAAGTTCGCTTG 18020 28 100.0 32 ............................ TTAAGCAACACACCTATAATTAAAAAATAGTT 18080 28 100.0 32 ............................ GGCAGATTCGAGCGCACCCCAGAAAAACTTAT 18140 28 100.0 32 ............................ CTTACGAGCACCACCATGAGAATGATTAGTGT 18200 28 100.0 31 ............................ TTAAATGCAAATGCCCGTTACTTACTGCGGT 18259 28 100.0 32 ............................ GCTTTGATAGCAACCGTTATGTCCATGCCCTT 18319 28 100.0 32 ............................ CTATAGATAACGGGTAAAACGCTTGGAAAAAC 18379 28 100.0 32 ............................ GCTTTCAGTCTCGCCACTCTCTCAGCTACCCA 18439 28 100.0 32 ............................ CATAAGCTTCAAAGCTTCGGTTTGATTCTTAC 18499 28 100.0 32 ............................ AGAGGAGGCGTTTGCCGAGCTGGGCGTAAATG 18559 28 100.0 32 ............................ ATATAGATCCGGTTGTGTTTGTTGCCTAGTGA 18619 28 100.0 32 ............................ AACAACGCAAACCATCACAACAGAGCAGGTAT 18679 28 100.0 32 ............................ CCTACCTTCTTGTATTCTGGAATTAAGTCATG 18739 28 100.0 32 ............................ ACTTGAAGAGGAGCTTATTGAGAAGCGCCATT 18799 28 100.0 32 ............................ AAATATACAAAGTCGTTCCTGTTTTGTTCTGT 18859 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 18919 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 18979 28 100.0 32 ............................ AAAGCGATCAGAGTTTATGATGTGAACTTTTT 19039 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 19099 28 96.4 32 ...........T................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 19159 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 19219 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 19279 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 19339 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 19399 28 100.0 32 ............................ TGAGAGGGAATCAAGTTGTCTAGAGAATTAGA 19459 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 19519 28 96.4 32 ...........T................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 19579 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 19639 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 19699 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 19759 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 19819 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 19879 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //