Array 1 65671-64007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQPN010000007.1 Salmonella enterica subsp. enterica strain ULBRA-SA245 NODE_7_length_187404_cov_7.396434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65670 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 65609 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 65548 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 65487 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 65420 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 65359 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 65298 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 65237 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 65176 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 65115 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 65054 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64993 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64932 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64871 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64810 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 64749 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64688 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64627 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64566 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64463 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64402 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64341 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64280 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64219 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64158 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64097 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64036 29 96.6 0 A............................ | A [64009] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83055-81929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQPN010000007.1 Salmonella enterica subsp. enterica strain ULBRA-SA245 NODE_7_length_187404_cov_7.396434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83054 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82993 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82932 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82871 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82810 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82749 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82688 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82627 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82566 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82505 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82444 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82383 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82322 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82261 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82200 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 82139 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 82078 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 82017 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81956 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //