Array 1 14498-16086 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDEV01000123.1 Acetobacter pasteurianus NBRC 3278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 14498 29 96.6 31 ............................C TGCTGAATGTTGCCGGTCTGCTGTCAAACGT 14558 29 100.0 31 ............................. TGATGAACTGGCCTGAACTGCAAACCGTGCA 14618 29 100.0 31 ............................. GAACAACCCTTGTTCCGTCCCTGCTGAATGT 14678 29 100.0 31 ............................. TTATGGACCATCAGGGAGCCGGAAAAGCCCC 14738 29 96.6 31 ............................A GTGGGCGATGCAGAAGCAGATCGCCGGGTAA 14798 29 100.0 31 ............................. TAGGCTATGGCTGTGGCGGCTTTCTCACCTA 14858 29 96.6 31 ............................T ACCCTGCGGCCATGAAAAACCTTGAACACCC 14918 29 100.0 31 ............................. TTCCGCTTCCCATTTTTCGCGTGTTGCTTCG 14978 29 96.6 31 ............................A GCGTCTCAAGAACGTTAAAGAAGTGTCAACA 15038 29 96.6 31 ............................C GCGTGATTAACCGCGCTGTGCAGGAAGGGCG 15098 29 96.6 31 ............................T TGTCCGTTGCAATGGATACTAGAGCGTTTCC 15158 29 96.6 31 ............................A TTCCATGCAGTTTGCAACACACCGCTTTTTA 15218 29 96.6 31 ............................A AGACCCGCGCTTAAAGTTTGATGAACAGAAC 15278 29 96.6 31 ............................A TGCAGGGGCTTCCATTCGTAAGCTGACACCC 15338 29 100.0 31 ............................. AGCGGTTATCTTGGCTGCACGCAGCTACTCG 15398 29 96.6 31 ............................C TTCTCGGCATCGTATGTATAGCGAGCCGTGA 15458 29 96.6 31 ............................T AACGGCAACGATCTAACGGCAACGAACGGGA 15518 29 96.6 31 ............................T GACGGCTCTATCCATGATGTCCAGATGATAA 15578 29 93.1 31 .............C..............A TTCAAATGCCCATCAGCACGCACATACGTTG 15638 29 89.7 31 ...C.........C..............A CTCCACACGGGCGTAATGGTCTCCTGCGAAT 15698 29 96.6 31 ...C......................... GAAGTGCCAGAGATCACGCCAGAACAGGCAC 15758 29 96.6 31 ...C......................... ATTATGGTAACGGCCACGCCCCGGCTTACCG 15818 29 93.1 31 ...C........................T GTCGCGGGTACGGTAGAGGGCATCTGCTGCC 15878 29 96.6 31 ...C......................... CTACAGCACGGCGACCCCGCGCCTGCCACAG 15938 29 93.1 31 ...C........................A TCAGGCAAATGGTAATCCAGTTCTGAACTGT 15998 29 93.1 31 ...C........................C TTGGTTGATGCTGAAGCTCCCTCCGTGCAGA 16058 29 93.1 0 ...C........................C | ========== ====== ====== ====== ============================= =============================== ================== 27 29 96.5 31 CCAGACCGCCGCATAGGCGGTTTAGAAAG # Left flank : AAAATCAGCTACTCCTGACGTACCTGCAAAAAGAGGCGTTCCGCCGCCGGCGCTAAACCCGATCATTACACCCGCCTTCCCAAGTTCTCGAACGGCGGCTTGCGTTATCGAAGTTCCTGGGCCGAGGAGTAACGTTGTGGTATTGGCAATCGGCACATTCCAATACAACCTCTTCTTGCCCGCATCCGTCACATACTCAACGCGCCCTCCATTCACGAGTAAGCGGCAATATTCCAAATAATAGATGTTGGCGCGTTTGGAGTACATAATGGTCTTGAGAGATGAAGGAGAAATTTCGTCCATAAGAAATATTTCCAAACAACATGCTCTTAACGTGAAAGCTCAATCCTAGCATTTTTCCACTTGATAAGACCCTTTTTTTTCGTTACCCAGAAATCTCTTAAAAACCAATGAGTTGTAAAATGCCTCAAAAAAAGGGGTAAAGGCTTATTGGATGATCTTTTGGCGGATTTCCGCCGCACATTGTGAATATTGTTCTA # Right flank : CAACTTTGCAATCCCGACACCTCACCGGCTGGCTCAGCTCTTCAAGATAGCAGCACGGAATCTGTAAGTGGACTTGATGTAATTGAGAATGAGCCAGAAGGCGATAGTTTTACGCCATAGTTCCAAGGAGGGGTGAAGGCCAACTAGACAGCCACATCACCCCTCCTCTGTTCTCACTTGGAAAATATGCCTTATTGCCTTTCCCATAAGTAGACGCACTTTCGAGTTTCTGAACGACCGTGAGCCTTCATCTGTTGAGAACTATTGCCTTTTCCTACAGGTAGAACCCAAATCTTGAGACACTTGAAGCCAAGTTTTTCGGCCATGCTTGAGAGGATGCAATCCACTGGAATAGTAATTCCATTGTAACGGACGTTGTCATTTACCATATAAACTTTTCCGTGGCGCTTCATAACTAATGCTAATTGATAAATATGAACTGCCATTTCAAAGAAATAGCACTCAATCATCCCTATGACGGCGTTGTTATTGAGGCGATG # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGACCGCCGCATAGGCGGTTTAGAAAG # Alternate repeat : CCACACCGCCGCATAGGCGGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10637-8722 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDEV01000113.1 Acetobacter pasteurianus NBRC 3278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 10636 29 93.1 32 ..A..................G....... AACGCGTGGGGTGTTTATTGTCGAGGGTAACC 10575 29 93.1 32 ..A..................G....... AGGGTATCATTTCCACCATTCCCGGTCAGAGT 10514 29 86.2 32 .CA..........C.......G....... GCAGCAGAGGCGTATCAACAGCAGACAAACAA 10453 29 93.1 32 ..................T..G....... CAAGCTCAATAACTCTTGATTGTGGTCAGGTT 10392 29 93.1 32 .............C.......G....... TGGGATTTGGCTGATGATTTTCCCCTTGAAAT 10331 29 89.7 32 .C..G......T................. AAGGCGCTGTTTGAAGCCGGTCGGGATCTGGA 10270 29 100.0 32 ............................. GCCGCTGTAACGTTAATGGTTGGCATTATCGC 10209 29 100.0 32 ............................. CTAATACGGGGAGTTTCCCATGTATCCGCAAA 10148 29 89.7 32 .......T.....C..........T.... TATTTGGGATGTCTCACTCACATGCTTATCGC 10087 29 96.6 32 ...............A............. CAAAAGCGCATGGCTGGGTCTCTTCCTGCTGT 10026 29 93.1 32 ............C........G....... AGCAATCGACAGATTGTCTGAACGATGAACGT 9965 29 89.7 32 ..T..............T...C....... CTCAGAGGCTGTACGAGTGGTAATGCCACGGC 9904 29 86.2 32 ..T...........AT.....G....... ACCACCGTTTTGCGTCCGACCTTGCGCATGTC 9843 29 93.1 32 A....................G....... GCTGTTGCTGGAGGCGCCACAATCAACGGCTG 9782 29 93.1 32 ............C........G....... AAGCAATAAAAGACATAAAGAGACATTAAAAA 9721 29 89.7 32 ............A..A........T.... ATGATTATTGGCTGGCTGTTTTTGTTCCATTA 9660 28 79.3 32 T..A.....A-.C.......C........ TCGGTGCAGCACCAGTACGACCGCCGTAGGCC 9600 29 89.7 31 A.......................TG... AAAATATGACCGCCTCGTCGTTTTGATCATT 9540 29 89.7 32 ...C.......A...C............. TTCAGTCTTTTCCGCAGAAAGAAGTCACCCCT A [9535] 9478 29 86.2 90 ...........T..G...T.....G.... GATTTCCTTTGCTCTAGTGCACGGAAGCAGAAGGGGTCCCCAGGAATGGGGGTTAACCTGCTAGTGTTGTCTGGACAGTTTTTTCCTCAA 9359 29 75.9 32 .ATC......TA.........G......A TAAAAAGGGAAAATCGTTTGAACACGCAGAAG 9298 29 82.8 32 T...........CC.........C....C TTAGCGGAATGCGTGGACAATGCATTGTTCAC 9237 29 79.3 31 .A.........T...CA.......T...T AGGATGGCCCAAATCTTGAGCCAAGCACGCC C [9227] 9175 28 72.4 32 ..A.C.T..T.T...-T....A....... TAGCCACCAATTGTCAAGAAAGTGTGCACTTA 9115 29 79.3 32 .C....A....A.C.A.....A....... AAAACCTGATATCAAACTCTGATTAGCAATAA 9054 29 86.2 32 ........T.T..A..............T TAAGACGATATCCTGATGTAACTTTAGATCCC 8993 29 93.1 32 ..A....T..................... GAGGTAATTGATCCAACTCTGGTGATGTTAAT 8932 28 82.8 31 .C...........A...A...-......T CTGTTGTTCACATGACACAAAACAAAACGGC G [8906] 8872 29 79.3 32 C.T........A...T.....G...T... CGCCATTCTATGGAGGCAGGGTTCGCAATATC 8811 29 82.8 32 C.TC.........A.......G....... TCACCACGATGACAGACCCTGTCTACTAAAAA 8750 29 79.3 0 ...A.......C.........A..GT..A | ========== ====== ====== ====== ============================= ========================================================================================== ================== 31 29 87.7 34 GTCTTCCCCGCGTGTGCGGGGTTTAACCG # Left flank : GTGGCGGCCCATTTAGATAGAAGTCATGGTGGGGTATAGCCAAGCGGTAAGGCATCGGATTTTGATTCCGTGACCGGAGGTTCGAATCCTCCTACCCCAGCCATTCCTATCCATTGGTTGGCGCTGGTAGCTCAGTTGGTCAGAGCGGGCCGCTCATAACGGCTTGGTCGGGGGTTCAAGTCCCTCCCGGCGCACCAATCTTTCCTTTTTAAAATCCCTTCCATAGCCTCATATCCAGAAAAAGGCTTTTAAGCCTGTACGAAGCCATTCTCTTCAATGGTTAATCCTGTCCCTATCTAGATATGAATTGGCCTTTTGAAAGCGTCATTACATAAAAAACAAGCCTTTGGCGTTGATCTATTTTATCTAGCTGTCTATCAATAAGCCTTCAAATCTTGAATTGGTTTCATCTAGCAGAATGCTATTTCTCGCCATTCGTGATTTCTCCGTAGATCTTTGACAACAAAATAATGCTTTGGAGCCAAACTCTTCCACAAAGA # Right flank : GGCTATGAAATCGCGAACCAAACTCCTTACTTTCTCCCCCTAAGAGGGGGAATGTACTGATCAATCACACATACAGAATGATACCTGTTCAAGCGGCGGTTAACTGGTCGCGGTCTTTATGAGAACTTTTCCCCCTTTTTAACGTGGGGATCAAACACACTGTAAATTTATCACATTCCGCAATTATTCCCCTTTCCATCATTAGGGGATCAGTCAGCAAGTGGATGTTTAAATCCGAATTCCCTTTTTTCGGGGATTATCCAGGTGAAGGCGGAGAAGTATAACGCGGAAAATGCCAGTTATTCGTCTCAATTGCTCAGAAAGTAAGTAATTCCTGAGATTGATTTCCGGTGATTCACCTGCCGAATTCCGCATAACCTAGGCATGTGATTACTATTCCCCTATCTGAAGGGGATAACTCGCGCAGAAATGCAGCGTTGCATTCTTGTCTTCAAGTACAATTTTGCTTCTGTCCCCACCAATACAAAGGGGATATATAG # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.10, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGTGTGCGGGGTTTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [47-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //