Array 1 3388938-3389986 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027426.1 Klebsiella oxytoca strain FDAARGOS_335 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3388938 28 100.0 32 ............................ AGATGCGTTCATGGGCCTGGCGCCGCGTTTTA 3388998 28 100.0 32 ............................ AGGCTCTTAAAATGCGGGATCTTTTCATCAAC 3389058 28 100.0 32 ............................ AGATTGAGGTCGACGGCCCGGAAATGCTCATT 3389118 28 100.0 33 ............................ AATCCCGCAACCCCGGAGGCTGGTCAATGGCCG 3389179 28 100.0 32 ............................ TGCAGCCCGAATGCGTTAGCTGTGCGAATATC 3389239 28 100.0 32 ............................ GCGTTCTATGGCTGCGCGAGCCTGCAGACGAT 3389299 28 100.0 32 ............................ TTGAACGTTTCGCCGCGGCAATGGAATCCGTC 3389359 28 100.0 32 ............................ TCTTGAGGCTGGCGGTACCGCAGGTACGGCAC 3389419 28 100.0 32 ............................ CAAGCCCCGTACCCTCATCAATGCCAAAATAG 3389479 28 100.0 32 ............................ GTGCTGGTCAGCGGCAACACGATAACGCTCAT 3389539 28 100.0 32 ............................ ACAACGGCGCCCACACTGGCGGGATTGTCTAC 3389599 28 100.0 32 ............................ ACGTCTTTAACGTTGGAAACGGTCAGCGGCTT 3389659 28 100.0 32 ............................ AGAAAGAGCAGTCCGCTCTGCTCATTACTCTG 3389719 28 100.0 32 ............................ TGCCGTCCAGCCTGCTGAAAACACCGGCAACC 3389779 28 100.0 32 ............................ GCTAATACAGGTCAAATCGCGGTTAATGCTCG 3389839 28 100.0 32 ............................ AAATCACGATGCCTACACCGGCAGCGATCCAG 3389899 28 100.0 32 ............................ GGATGACCGATAGCATCGGCATTTTTGAATTG 3389959 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCAGCAGCATGCTGGTAGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCCGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTACTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGGCGCTATTCCATTGGTGGAAACTCGGCCTGGCGCTAAGTGCACCAGGGTTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTTTTTGGGGGGTATTTTAAGATATTGATTTTTTAATATTTTTATTGTTGTCACAAAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGTCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3403245-3403753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027426.1 Klebsiella oxytoca strain FDAARGOS_335 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3403245 28 100.0 32 ............................ CAGTGAACGCGGCGAACGAGCTCGACAAAGCG 3403305 28 100.0 32 ............................ GGACGCGGCACACTGGCAGCGTGCGGCAGCAT 3403365 28 100.0 32 ............................ GAATGGCCAGACCATCCCGGCAACAGCTTACC 3403425 28 100.0 32 ............................ TCGAGCTGACCGGCGACCCCATCATTTTGAGC 3403485 28 100.0 32 ............................ AGATAACCCTGCAATCCTGCACACTGGCAACC 3403545 28 100.0 32 ............................ TGATACCAATTATTGCGTTTATAGCAAAAATA 3403605 28 96.4 32 ............G............... CTTACGAGATGCTTTCTATCTCACTAGCAATA 3403665 28 96.4 33 ............G............... AACCTCCCATGCGGCACCATCTTCCGTATGCAA 3403726 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGTGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTACGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCGCTTTTGTAAGCTATTGATTTGATTAAAGTGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAACTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAAGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTTTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGTCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3412182-3412870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027426.1 Klebsiella oxytoca strain FDAARGOS_335 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3412182 28 100.0 32 ............................ TGCTGGCGACGGCGCTCATCCTCCCGGATATC 3412242 28 100.0 32 ............................ AAGCGGCAGAGGGAGTCTGATTGATGGAAATC 3412302 28 100.0 32 ............................ TGCTGCGGCTGGCTTTCACGACGGCCGCCCAG 3412362 28 100.0 33 ............................ ATCGAAAGATGACGACTTTTACAATTAGACCAT 3412423 28 100.0 32 ............................ GTAATATGGCTCGTTGAGCGCAAAGGGGCTGG 3412483 28 100.0 32 ............................ TTTACCGGCGCGCACCCAATCTGACGATGAAC 3412543 28 100.0 32 ............................ AGTCAGCCCGGCCACGCGCAAGAGCTGCACGA 3412603 28 100.0 32 ............................ GAAGAAGAGCACGCGCAGGAAGCCCGCGATGT 3412663 28 100.0 32 ............................ ATGATGCACTCATCCTGGTGACGCCCGCAGTG 3412723 28 100.0 32 ............................ TGAAGGCGGTGCAGCTGCGGCTCGATCAGAAC 3412783 28 100.0 32 ............................ TAGCGCAACAATCACTGCGGGCGGCGGTGGAA 3412843 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGCGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAAGCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAGGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGCTTGTAGTGGTTAGGCTTCA # Right flank : ATCGTGGCGGTTATGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTACGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //