Array 1 218009-216329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDOS010000018.1 Salmonella enterica strain 889B NODE_38_length_712406_cov_167.012039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218008 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 217947 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 217886 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 217825 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 217764 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 217703 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 217642 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 217581 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 217520 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 217459 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 217398 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 217337 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 217275 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 217213 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 217152 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 217091 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 217030 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 216969 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 216908 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 216847 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 216786 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 216724 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 216663 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 216602 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 216541 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 216480 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 216419 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 216358 29 93.1 0 A..............A............. | A [216331] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235366-234179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDOS010000018.1 Salmonella enterica strain 889B NODE_38_length_712406_cov_167.012039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235365 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 235304 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 235243 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 235182 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 235121 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 235060 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 234999 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 234938 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 234877 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 234816 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 234755 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 234694 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 234633 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 234572 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 234511 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234450 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234389 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 234328 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 234267 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 234206 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //