Array 1 1074639-1074333 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP033390.1 Staphylococcus aureus strain SCDR-SA1 chromosome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence        	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=======================	==================================	==================
   1074638	    23	 100.0	    34	.......................	CATTGTTTGTNNNNNNNNNNNNNNNNNNNNTCTA	
   1074581	    23	 100.0	    33	.......................	TTGTTTGTTGGAATTGGTGATCCTATTTCTCTC 	
   1074525	    23	  95.7	    33	.....T.................	ATTTTTGTATGCTGACTTTTCGCCAGCTTCTGT 	
   1074468	    23	  91.3	    33	.......C....C..........	TTGTCTGTTGAAATTGGTGATCCAATTTCTCTA 	
   1074412	    23	 100.0	    33	.......................	TTGTCTGTTGGAATTGGTGATCCTATTTCTCTC 	
   1074356	    23	  73.9	     0	.....T......A.G.GT...A.	|                                 	A [1074338]
==========	======	======	======	=======================	==================================	==================
         6	    23	  93.5	    33	TGTTGGGGCCCCGCCAACTTGCA	                                  	       

# Left flank :   AATTTGAAACAATTGAACATCCTTACTTTAGCTTTATATCTTTATTTCAAGTCATGTTTTCAACTATTTTAATGAATTAAACATATATTATAAGGAGTCAACATCATGAATAAACATATAAATAAAAAAGCCGCAAAACTACTTGAAGATTATAAAAAGGTTCAACAAAGAAAATCGAAAGAAACTGATAGAGGTTGTTTGAAAAGTGTCATCATGCTTATCGTCTTATTTTTCTTAATTATTTTTGGTATTGTGGCATGTTCTACAAACGTAAACTTTTTCTTCCAGTAAAAGAGTGAGATAGAAATGATAAAGAACCACTAATGATTTATTATGTAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAAATGAATACATGAGTAAAGCTCATGCATAAGAAATACTAATTGCTAAAGAAAAAGTATTTCTTTATCGATGTCCTACCCCAACTTGCATTGTCTGTAGAAATTGGGGTTCCAATTTCTCTA
# Right flank :  AAAACTTGTTATAAGCTTATTTTCATTTAGTCAACTACTACCAATATAGCACTAGAACTGGAAATGATAATTTAATATTGTACACTTTTGATTGTTTAAACATGTACATATTTTAAAAAATAGGAGAGCAAAGTAAATAATTGATATAGTTATTTTGAGAGTAATCCTAGGAACTATTGTATTTATATTTGTCTCCCCTACTTTTAAATGTCATTCATTATACATAAGCATTTTGATATAGAATTTATCACATATGCAAATTGAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGCATCAGCCATTGATACGAAATCATTTTTCTTAAGTGCCGCTTTAGCTCTATATTCATTCATCATAATCGTACGTTTATAATATGGATTTAAGCTTCCTGCAGCTAATGCATATACATTCGATTTGTTAAGTAAAGTTC

# Questionable array : NO	 Score: 2.54
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TGTTGGGGCCCCGCCAACTTGCA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-2.10,-2.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.64,0.78   Confidence: LOW] 

# Array family : NA
//