Array 1 6250-6522 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDCS01000963.1 Streptomyces niveus strain NRRL 2449 Streptomyces_spheroides_NRRL_2449_contig_963, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6250 28 100.0 33 ............................ GGAGATCAAGATGAAGTTGTTCGGTCGTGAGCC 6311 28 100.0 33 ............................ GGCGTTGCAGGTGTTCGACGAGCTGGCCGGCGC 6372 28 100.0 33 ............................ ACGTGCTACCTAATTCGCCTTCCCAAGCTGTAC 6433 28 92.9 34 ...........A....G........... GTTGATGTTGTCGGCCCGCCGGCCCCGAATAGGC 6495 28 92.9 0 ...........A...............G | ========== ====== ====== ====== ============================ ================================== ================== 5 28 97.2 34 GTCCGGTCCGTGCGCGTGGGGAGCGACC # Left flank : CGAAGGTCCGGCAGAAGTCCGGACTCAACCGCTCCATCCTCGACGCGTCGCCCGCGGAAATGCGGCGTCAGCTGGACTACAAGACCCGCTGGAATGGATCACAACTCGCCGTGTGCGACCGGTGGTTCCCCTCCAGCAGAACGTGCTCGGCCTGCGGGTGGCAAAAACCACGCCTGACCCTGGCCGAGCGCGTGTTCAACTGCGGACAGTGCGGTCTGGTGATCGACCGGGATCTCAACGCCGCCCGGAACATCGCCGCCCACGCTGTCCTCGTGCCGCACGGCACCGCCGCCCCCGGTAGCGGGGAGGCGTCAAACGCCCGTGGAGCAGCCACAAGACCCGCCACCCCTCGGGGCGGAAGGCAGGCCGCGCTGAAGCGGGAAGACACTGGTCCACCGCGGCCGGTGCCACCTCAGCGGAGCGATCCGCTGACGCTCTTTACCCTCGACGTACCGGACCAGCAAACGGCAAAGCGGCCCTGAAACCGCAGGTGGCGAAGT # Right flank : GAGTTGCTGTTGTGCCTGCCCGCATGCCGTCTTGGTCTAGGCGATCTCCCAGCGGTTGCTGTCGTGGGTCTGTTCGTGTGTGTTGCGGGCGGTTTCCAGGAGGCGCTGCCAGGAGGTGACGTTTGGCCGTCGTCGGAGCAGCGCGCGGCGTTCCCGTTCAGTCATGCCGCCCCAGATGCCGAATTCTTCGCGGTTGTCGAGCGCGTAGGCCAGGCATTCGGTACGCACCTTGCAGCCGAGGCAGACGGACTTGGCCCGGTTCTGCTCCTGGCCCTGGACGAACAGGGTGTCGGGGGCGACAGTGCGGCAGGCCCCTCGTTCGCTCCATCTCGACGGCGCGTTCACTGCGTTTCCTTCCCATGGGGGAGAGTGACGCTACAAAACATTCCATCGTTGAAACAGACCGCGGTGCGGGAGTCACTCGTTCGGGTGCCGATCGCAGGAGTGCGCCGAGTCGAGCCTCAACAGCTCGCATTCTTCCGGCTCTTGAGCGCGCCGGC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGTCCGTGCGCGTGGGGAGCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 578-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDCS01000565.1 Streptomyces niveus strain NRRL 2449 Streptomyces_spheroides_NRRL_2449_contig_565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 577 29 100.0 32 ............................. ACCTCCGCGACCTCGCCGCAGCAGCCGCAGCC 516 29 96.6 32 ...T......................... TCGATCACCCTCGACGCGGCCACCCACAAGGC 455 29 96.6 32 ...T......................... TTGAGGGCGATCACGGCAAGCGCCCACAGCTT 394 29 100.0 32 ............................. TACTGGCTCTCGCGGGCCATAGCCCGGTAGGT 333 29 96.6 32 ............................C GAACAGGGTCGGGAACATGAGGCTCTCCTAGA 272 29 100.0 32 ............................. CGCGGGGACGGCGAACGCGACCGCGTGCGCGC 211 29 96.6 32 ...T......................... CCGCCGCGAAGGGCGAGGACAAGCCGATCAAG 150 29 96.6 32 ...T......................... GACACCGACATGGACAAGCAGCAGGCCGTACG 89 29 100.0 32 ............................. GCGGGGCCGGCGGGGGTGACGATCGCTGCGCA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.0 32 GTCCTCCCCGCCCGCGCGGGGGTGTTCCG # Left flank : TCCCGTAGCACTTGGCTCAGCTTCTCGTACGCCTCGGCTACACACTGCTGGAATCCCGGCGTCAGCTTCCCAAGATCATGGAGACCTGCCCAGAACGCCGCCAGTACCCGGGCCTCTCTCTCCTCGACTCCCAATCCACCAGCGATCGCGGCCCGCTGATTTGGCGCCAGAAATCGGTCCCACAGGTCCAGCGCCACGGCGGCGGTGTCGAGCAGGTGAAAGAGCAACGGGTACGCCTTTGCGGCCTTCTCCGCTCCCACCTTGCCCCACGGACTCAAGTCCCGCTCATTCAAATTTTGTTCGGCCACGCCGCTCCGTCTCCTCACCGATGCGAGGGGAGACATACAAGCAGCCAGCACTGACAATCGCCCTGACCAGCACCGATCCATGCCACACAGCTCGGCCGCCACCGCGCGTTACCCTTACCGGATGACAAGCCGCGACGCACGGATGAAAGTAAAGCGATTGCTAAGCCCTCGCTAAGCCGCAGGTCACGAAGT # Right flank : C # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCCGCGCGGGGGTGTTCCG # Alternate repeat : GTCTTCCCCGCCCGCGCGGGGGTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCCGCGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //