Array 1 8475-7120 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFNF010000015.1 Streptococcus suis strain 11-6HN131 11-6HN131_scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8474 36 100.0 30 .................................... TTGCTGCAGCGGTGTCTTTGAGGATGACAA 8408 36 100.0 30 .................................... CCATATTTTCCTGAGACAGCTCTTGTAGTA 8342 36 100.0 30 .................................... TATAGTACCTGCTACTAATTTATCAATGTT 8276 36 100.0 30 .................................... TCAACTTTTTAGTAATAAAACTTTGGAAAA 8210 36 100.0 30 .................................... TGGAATAACTGGATTGATTGGTAATTTCTT 8144 36 100.0 30 .................................... ACGGTGAAGCCACTTCTAGTTCATCAACAA 8078 36 100.0 30 .................................... CATTGCTTCTTACTTGATTTGAACCTATTG 8012 36 100.0 30 .................................... GGTGTTTATTATCGGACATCTTAGAGGAGC 7946 36 100.0 30 .................................... TTTTACCTCTGGACTCTTTGACGGCTCTGA 7880 36 100.0 30 .................................... TACGAAAGCACGCATGGATTTCTTGAGTTC 7814 36 100.0 30 .................................... GCTTCCAACTGCTCCACCAGCTACCAGCTC 7748 36 100.0 30 .................................... ATTTCCACTTGAGGAATCTTGCGGAACTGA 7682 36 100.0 30 .................................... TGTTGCAGCTCGTCGAAAATGAAGCACAAA 7616 36 100.0 30 .................................... GCTCATGCGGTTTTAATCAAAACATTTTGC 7550 36 100.0 30 .................................... TTTAACCGTGGCTGTGGTTACAGGACGAAC 7484 36 100.0 29 .................................... ATCGATGGATTTCATTAGATAATGATAAT 7419 36 100.0 30 .................................... TAAAGTTGCCACAGTCGATGAATGGTTATC 7353 36 100.0 30 .................................... TATCCATAATATCAATAATAGTTACTTTCA 7287 36 100.0 30 .................................... TTTTGTGATTGGCGTTGTTCTTGAAGTCGC 7221 36 100.0 30 .................................... ATAGAGGGAATGTAGACATGAATCGAAATA 7155 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTAAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGCGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : GTATAGCTATTCAGATTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTCCCATCTCCCCCTCCATGCTATACTATATATAATCGTTTTACTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTTGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCGGAAGGGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTGAAAAATATTGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAGGTGGTAGCAGTCAATAGTAAGGACTGCATCTGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //