Array 1 273069-271900 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIIR010000001.1 Escherichia coli strain PBIO1289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 273068 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 273008 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 272948 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 272888 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 272827 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 272767 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 272707 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 272647 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 272587 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 272527 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 272467 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 272407 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 272347 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 272287 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 272227 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 272167 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 272107 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 272047 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 271987 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 271927 27 92.9 0 .......................C-... | T [271908] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 282757-282126 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIIR010000001.1 Escherichia coli strain PBIO1289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 282756 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 282696 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 282636 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 282576 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 282516 28 100.0 33 ............................ CTGCTCGACCCTGTCATGCGGCGCATCCGGCTC 282455 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 282395 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 282335 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 282275 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 282215 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 282155 28 85.7 0 ....................T...C.CT | C,A [282129,282132] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //