Array 1 667262-666434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHB010000004.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-005 tig00000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 667261 36 100.0 30 .................................... AACCTCTATCAATTAAGTCACTTGATACAA 667195 36 100.0 30 .................................... TGTATCTTTTAAAAGCAGTCGCTCCCCTGT 667129 36 100.0 30 .................................... TATCGGTATTGCTTATAATTGGAGGAAGTA 667063 36 100.0 30 .................................... CAAAAAACAACACACTTTACCTGCCACCAG 666997 36 100.0 30 .................................... TAACATATTATCAAATTAAAAGTGCAAATT 666931 36 100.0 30 .................................... CCTGCAAGCTGAGATTAAGCTGGCAGCCCA 666865 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 666799 36 100.0 30 .................................... ATTTAAAAATGCTAACTGCTGCAATTTATA 666733 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 666667 36 100.0 30 .................................... GTCAGTACCAAGCCTATGACGTGTTTACGG 666601 36 100.0 30 .................................... TATCAAAAATAGTTTGTAAATTATCAATAT 666535 36 97.2 30 ..................T................. ATGGCCGCATGCACTATACATTTACCGCAA 666469 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.7 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTATTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 922982-923802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHB010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-005 tig00000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 922982 26 100.0 41 .......................... AGTGCTAATGTCACTGTCTGTCAACTTGGTAACATGTCTCG 923049 26 100.0 39 .......................... GTTGTGGTATTGGTCTGATAACCATTTCCCCAAGTCTCG 923114 26 100.0 40 .......................... TTTTCAAATTGGTTAAAGTCTTACCCTCAAAATTGTCTCG 923180 26 100.0 40 .......................... AATGGGTGTTTTTTATCGTTAAGAGATAAATGCTGTCTCG 923246 26 100.0 39 .......................... TTTTCAGCCTCAGCCTTAGCTTGTACAGCTTGAGTCTCG 923311 26 100.0 39 .......................... ATAATTTATCTTTGATATTGTACAATATATTGTGTCTCG 923376 26 100.0 40 .......................... AAAAATTTATTGATAAAATACTGCTGACCCTTACGTCTCG 923442 26 100.0 40 .......................... TACGATTATCATTTAAATACTAAAAAAACTACAGGTCTCG 923508 26 96.2 42 A......................... CATATCTCCTTGGGTTATCTGTGCCATCAAGGTTAGGTCTCG 923576 26 100.0 41 .......................... TGATGAAGCTGCTACAAAGCGTAAGGAGGAGTTAGGTCTCG 923643 26 88.5 41 ...TT.G................... TTTGGCATGCCTCACATCAGACTCATGTCTAGCATGTCTCG 923710 26 88.5 41 ...TT.G................... CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG 923777 26 88.5 0 ...TT.G................... | ========== ====== ====== ====== ========================== ========================================== ================== 13 26 97.1 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGCCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //