Array 1 101155-101302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCMU010000008.1 Escherichia coli strain EF1-18-06-B NODE_6_length_178563_cov_157.710235, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 101155 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 101215 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 101275 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTGTTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 219067-220315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCMU010000003.1 Escherichia coli strain EF1-18-06-B NODE_2_length_344462_cov_185.299458, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219067 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 219128 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 219189 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 219250 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 219311 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 219372 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 219433 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 219494 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 219555 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 219616 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 219677 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 219738 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 219799 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 219860 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 219921 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 219982 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 220043 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 220104 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 220165 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 220226 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 220287 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 246015-247018 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCMU010000003.1 Escherichia coli strain EF1-18-06-B NODE_2_length_344462_cov_185.299458, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 246015 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 246076 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 246137 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 246198 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 246259 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 246320 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 246381 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 246442 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 246503 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 246564 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 246625 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 246686 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 246746 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 246807 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 246868 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 246929 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 246990 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //