Array 1 3073750-3072012 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJE01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00691 2015LSAL00691_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3073749 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 3073688 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 3073627 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 3073566 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 3073505 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 3073444 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 3073383 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 3073322 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 3073261 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 3073200 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 3073139 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 3073078 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 3073017 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 3072956 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 3072895 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 3072834 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 3072773 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 3072712 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 3072651 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 3072590 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 3072529 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 3072468 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 3072407 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 3072346 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 3072285 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 3072224 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 3072163 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 3072102 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3072041 29 93.1 0 A...........T................ | A [3072014] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3091211-3090390 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJE01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00691 2015LSAL00691_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3091210 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 3091149 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 3091088 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 3091027 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 3090966 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 3090905 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 3090844 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 3090783 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 3090722 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 3090661 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 3090600 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 3090539 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 3090478 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 3090417 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //