Array 1 676-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUPG01000016.1 Petrotoga sp. 8T1HF07.NaAc.6.1 c2_13_corrected, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 675 30 100.0 36 .............................. TATTTTTTAAAAAGTTTGCTAAAATTTGTTTCTTCT 609 30 100.0 36 .............................. TTCCTCAACCTCCTTTTCATTTTTCACAACCTCCAA 543 30 100.0 38 .............................. AATGTCAAGAAAAATACTCCAGAGAGCGAACGTGTTAG 475 30 100.0 38 .............................. ACATTAAAGTCCTTATCACTGATTCTTTGGGCACTGTG 407 30 100.0 40 .............................. TTAGAACAATTACCATGGCTGCTCCAAAGTATATTGATGC 337 30 100.0 35 .............................. TCAAGATGATTTAAAAGTAATTTCAGAAGCTAATC 272 30 93.3 36 ..A............T.............. TTTCTTTTGAACCAATGAATATTCGTTGAAAGCCGA 206 30 93.3 37 ..A............T.............. AGAAGTTCTGCATGCCCTTTTTTTACCCAATGTCTGT 139 30 93.3 38 ..A............T.............. GTGTTCATTTTTTTTACCTCCTTTTCAAAAAAACTCTT 71 30 93.3 0 ..A............T.............. | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 97.3 37 GTGTCTATCCTACCTCTAAGGAATAAAAAC # Left flank : ATTGAGACTTTTTTCATTTTTGAACCTCCTAATTGGGATTCTGTATTTTTCGCAATTTACCCCTTGAATATTCTCGAATATTCATTTTAATTATATCATAATAAAAAAACAAGCAATAAATTTTGCTGCTTTGTACAAAACGCTTTTTGCCGCTTTATGCAAAAGTTTTATTCGTAATTCTCTAAAAACTGTTTCCATATTCTCGTTTGCTACGCAAACGATGTACCGCGCAAATGACGTACAACCTCAAGTTAAACAAAAAGAAAGTTTAGTTTAAATTTCAACAAACTAATATTCATATATTTAACCTAAAACAGAAAAAGTTATAAAAAAACGTCTGTCGACCTCCAATAAGGTAAAAAACCCAGGGGATCGACAGACAAGTGTTAAAAGTCACAAGACTCATTTCATAAGCTTTTGAATCGATTTTTAACAATTTCTCAAAGTTTTGCTTGACAAATGTAATTTTTTATGATACACTTTTTATCGTGAACCTATGG # Right flank : CCTTGATATTTTATATTTTTGTTTTCGTCCTGGTAAGTATCT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCTATCCTACCTCTAAGGAATAAAAAC # Alternate repeat : GTATCTATCCTACCTTTAAGGAATAAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 24980-24823 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUPG01000015.1 Petrotoga sp. 8T1HF07.NaAc.6.1 c2_30_corrected, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 24979 26 100.0 40 .......................... GTCTTCTGAAAAGAAAAATATCAGTTAATTTTAATGAAAA 24913 26 100.0 39 .......................... GTCAAATTATAACCTTTTTATATGAAACAGGCATGGGAG 24848 26 92.3 0 ........G..............A.. | ========== ====== ====== ====== ========================== ======================================== ================== 3 26 97.4 40 TTTTAATCAACCAAAGAGGAATTTAA # Left flank : GAAAATTACATTCGAAGAATCGAGCAACTTGAGGAGATCGCAAAATCATTCAGATACGTTGATAAAGCTTATGCAATACAAGCAGGAAGAGAATTGAGAATAATAGTTCAACCAGATAAAGTTGAAGATGAAATCGCAGAAAAATTGGCACACGATATATCTGTTCAAATAGAGGAAAAGGTTCAATATCCTGGTGTAATCAAAGTAACCGTAATTAGAGAAAAAAGAAGCATATCTTATGCAAGTTAGAAATCAGTTAATATCTTAGGGGGATACACCCCTAAGATTTTATTTTTATAATAAAATCAGGTGTTTATTATGACAGATTTTGAACCATCAGGGTATTCAATAAAAAAACGCTTCTTTCATTTATTTATGGCTGCTTTAATATTCTTACGTTTTTGTAACTGTCAAACTCAAGAAAAATCATTAAGGGTTTGACGCAAAATATTAAATATGAGTTATTTCTAATTCTTAATTAATCGTATTTTTGATAACTA # Right flank : TGGGAGAACTGGCAGCTAATCTAAAAGGTGGAGAACCTTGTCTGTATATAGCTACCAGTTTTTCCTGGTATTACCTCGATTTTTGATTTAATTCTTTCTTTCAATTCACTTACATGAGATATTATACCCACCATTCTCCCAGTGCTGTTTAGCTCCGTTAATACTTCGATTGCACTATCAAGAGAGTTTGTATCAAGGCTGCCGAATCCTTCGTCAATGAAAATCGTATCTAAAGAAATACCCCCAGCTTCGCTTTGCACCACATCGGCTAATCCTAAAGCAAGAGCGAGTGCAGCTTTAAAACTTTCTCCTCCTGAAAGTGTTTTTATTTCTCTTTCTTTTCCAGTGTAGATATCAAAAACCATGATTTCTAAGCCTTCACTTTTCCTTGCATCAAGTACCTTAGAAGATCTATGCAACTGATATCTCCCATCTGTTAATTTGTTTAATCTTAGATTCGCTTGAGCTAATATTTCTTCAAAATAATAGGCTAGTACATA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAATCAACCAAAGAGGAATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 610-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUPG01000033.1 Petrotoga sp. 8T1HF07.NaAc.6.1 1_contig00041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 609 30 100.0 36 .............................. GAATTCCAAAATATTTACAAAAGCAAATTGATTTAT 543 30 100.0 37 .............................. TATTTCTTTCCATCAACATAAATCGTATTTCCAACTT 476 30 100.0 38 .............................. TAGGTTCTTGGTTCATTCTTATACTTTTTTAATAATTT 408 30 100.0 38 .............................. TGATATGCCTGATTGGATAGTAAGAAAATATGAAAATA 340 30 100.0 35 .............................. CATCTTTTCTTAATTTAGTGGATCTTCTATAATTC 275 30 100.0 36 .............................. TTCCCTTTTACACTTGTGGAATGACCGATATAATCG 209 30 100.0 36 .............................. GAAAAATTAGAAAAAGATTATTTATAAAGGAGGCTA 143 30 100.0 36 .............................. TCAATAGTAGGCGGGGCTTCTATACAGCAAGCGCAA 77 30 93.3 0 ..G............T.............. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 99.3 37 GTATCTATCCTACCTCTAAGGAATAAAAAC # Left flank : AAGGAATAAATTTTGCTGATCTGTGCAAAAAGATTTACTCATAATGCTTTAGAAACACTTTCCTAATTCTCATTTGCGTAGCAAATGACGTTAGTGTCTTAGCCTACCTCTAAGGAATAAATTTTGCTGATCTGTGCAATAGATTTTTGCCGCTTTATGCAAAAGTTTTATTCATAAGTCTCTAAAAACTCTTTCCATATTCTCGTTTGCGAAGCAAACGATGTACCTGGCAAATAACCTACAACCTAAAGTTAAACAAAAAGACAGTTTAGTTTAAATTTCAACAAACTAATATTCATATATTTAACCTAAAACAGAAAATCGTCTAAAAAAACGTCTGTCGACCTCCAATAAGGTAAAAAACCCAGGGGATCGACAGACAAGTGTTAAAAGTCACAAGACTCATTTCATAAGCTTTTGAATCGATTTTTAACAATTTCTCAAAGTTTTGCTTGACAAATGTAATTTTTTATGATACACTTTTTATCGTGAACCTATGG # Right flank : CACTCTTTGTATAACTCTAGAAGGTGTCGCTTAACGGCACTTGTGTCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATCCTACCTCTAAGGAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 54798-55815 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUPG01000011.1 Petrotoga sp. 8T1HF07.NaAc.6.1 c2_9_corrected, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================ ================== 54798 30 96.7 80 ......................C....... ACACGTTATTTGCGGGGCAAATGAGAGTTTTGAAATTTTTTCAAAAGCATTGCAAAGAAAGCATTTTTGCACAGATCAGC A [54822] 54909 30 80.0 40 AAAA.................AG....... CCTGTTTAGGGAGAATAAACTCTAATGTAAAATGGAGAGC 54979 30 96.7 39 .........................T.... TCCGAAACTTTGGAAAGCCAAATTAGGGAGAAGAGTTGC 55048 30 100.0 35 .............................. GTTTATTGTTATAATGCTTATGTTGAATTAAGATT 55113 30 100.0 37 .............................. AGGGAAAATCCTAGACTTATTTTCAAAATATTACAAT 55180 30 100.0 39 .............................. CATGTCTTATAACATAATAATAGCTTTAGATGAAGAAAT 55249 30 100.0 39 .............................. TTTAAAAGCTATAGCTGAAGAATGCTCTGAACTTACAGT 55318 30 96.7 37 ................A............. TTTTTGAAAATCAGCTTCTCCCATATCTATTATTTTC 55385 30 100.0 37 .............................. AAGGTACTTTGCCTTTTGCTTTTGAAGGATTAAAACT 55452 30 100.0 39 .............................. TAAAGCAAGATTTCCCAAAACTAATGAATTGTATGTAAA 55521 30 100.0 36 .............................. TCTAGGATTACGTATTAATGTTGGTACAAGAGATGG 55587 30 100.0 36 .............................. TTCTTTGAGGAAGATGTACCATTCGTTGTCAGAAAT 55653 30 100.0 37 .............................. TCTAATTTTTTTATCATTTTTTTTAATTAATTCTATC 55720 30 100.0 36 .............................. TTAGAAAGGGAGGTAGTTAAAAATGATATACTTGGG 55786 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================================================ ================== 15 30 98.0 41 GTTTTTATTCCTTAAAGGTAGGATAGACAC # Left flank : ACCAGCAAAATTTATTCCTTAAGGTGGGATAAGACTTTAAACTATTATTGGCACTTTTGGTTAAAAAATAGTCAATTAATAGTCCATTTCTTGTTTTAAAACACCAAAGTAAACAAAATTGTTCACTAAAGTGTATAGAATAGAATTGATAAAAAAGTCGAACATTTGTATAAATCTTGCATATATAGGAGTCTTCAACTTGAATGAGTTTTTAAGCTATTATCTCAAAAATCAGTTGTCCTCACAATCATCAAAATAATGATCTTCTAGTTCTGAATTGCAATCTTCTTCCAATATTTTATATATTTTTTCTTGTTCTTCTTCAAAACTATCTATATAAAAACTATCTGGATAATTTTCACAACTATTTGTAATTCCTTCTATATTTAACCACACTTCGTTAGTTTCTAACTTTTTATATTTCCTTTTATCTATCTTTTTACTCATTTTACTTACCCCTTTATTTGTATTATCATAAAAATTTTTTTAAAACTTTTTGA # Right flank : CGCATGGGTTCACGATAAAAAGTGTATCATAAAAAATTACGTTTGTCAAGCAAAACTTTGAGAAAATGTTAAAAATCAAATCAAAGGCTTATGAAACGAGCCTTGTGACTTTTAACACTTGTCTGTCGATCCCCTGGGTTTTTTACCTTATTGGAGGTCGACAGACGTTTTTTTATATCATTTTCTGTTTTAGGTTAAATAGATAAATATTTGTTTATTAGAAGTTAAGTTAAACAGTGTTTTCGCTTAACTTAAAGTTATATAAGCAAAATTGATGGATATTTAGGTTCCATATTTGTTAGAAATTGGATATGATGCAGATCTTGGGGCAAGGAATTCTATTATTTCCTAATATATCTTTTATTTTGCTTGGTGTTGGATCTTTTTGATTAGATGTCTGATTGGGTTTTATTATGTTTTCTTCAACAATTCGATCTTTTGTTTGAGTTGTCTTTTGTAAGGATGAACTCTGTTCTTCGAAATCTATTCTTTTACGATAA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTCCTTAAAGGTAGGATAGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 64340-62999 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUPG01000010.1 Petrotoga sp. 8T1HF07.NaAc.6.1 c2_7_corrected, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================== ================== 64339 30 100.0 36 .............................. TTGGATAAAAAGATTTCTGAAGGTGACGAGGTTTCT 64273 30 100.0 37 .............................. CTTAGCATCGCATTCATTTCTACGACCGCTTCCTTCA 64206 30 96.7 37 .........A.................... AACTATTGGATGATCTATCCTTGACAAATAATTCAAA 64139 30 100.0 43 .............................. CTTCCAGTATAAATATTTCCTTCGGCTTTTCCTGTGAAAACAC 64066 30 100.0 36 .............................. GTGTGTGATCCAAAAGAAATTGCAGGTGCGGTTTGC 64000 30 100.0 36 .............................. ATTTCCAAAGCTAATAAAGCTTTCTGGCTTGCCGTC 63934 30 100.0 38 .............................. TAAGATGGTTCTGTATATGATTTTACCTTTTCAAGAAA 63866 30 100.0 36 .............................. TTGCACTGTCGTAGTGTACACATTTGCTAACCTTTC 63800 30 100.0 38 .............................. ACGCTGACGCTATGCCGAGACCTAATCCTATATCTTTC 63732 30 100.0 39 .............................. TTTGGATCGATAAATTTCTTTTTTGATTTGAAAGTATAA 63663 30 100.0 38 .............................. GTTATTATCTCATCAGCAACTCCAAAAATGTTTACAAG 63595 30 100.0 35 .............................. AAGGTATTGAAGAAGATGAGATAAAGAATTTGAAA 63530 30 100.0 36 .............................. TTAGTCTCAATCCCCAAATCTTCAAGTTGATTTTGA 63464 30 100.0 35 .............................. CTTCTTCTATTTTCGTTCTTTCTTCAAGAATGTCT 63399 30 100.0 36 .............................. TTTGCAAAGTTGGTAGATTAGCCTAACTCAATTCCC 63333 30 100.0 36 .............................. TGTCTACTTTGCCATCCTCTGATAGAATAACTTCAA 63267 30 90.0 56 ...........................GGG GGTGAAGAGGAATGGAAACTCTTAAATCCTGTGAATTCACCCGCTAATGGAGAAGG 63181 30 90.0 56 T...........................GG TAGTGGTAGGAATGGAAACTCTTAAATCCTGTGGATTCACCCGCTAATGGAGAAGT 63095 30 96.7 37 .................A............ AATATAAAGATACGGCATGTCCATCATTCATATTTGA 63028 30 90.0 0 ...........................GGG | ========== ====== ====== ====== ============================== ======================================================== ================== 20 30 98.2 39 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : TCCAAAAATTTCGATAATGCTCCAGGACGAAACATTTCAAAAGTTAAACCCTTTTTGACTCCTGGAACAAGAGTTACAGGAGAACGAGAATATAAGGCAGAATTAAATTACGATGGTACTCTTATAAATATTAAAAAAAGAAGAACAGGATGATAATTGAAAGAGTTATAGAAGAAACACAGCCTTATTTAGAAGGAATAAAGATCAAAGATACGGGTATATAGATTTCACTTATTGGTTTGGAACTTAGCAATAATCATGTATTTTAAATTAAAAATCAAGGTCTCTCTTGTAATATATTTTATTAACATAAAAAGCAGGAAGGTATGAAAAATGTCTGTCGACCACCAATAAGGTAAACATCCCATGGGATCGACAGACAAGTGTTAAAAATCACAATCCTTATATCATGCATATTTGAATTGATTTTTAACAATTTCTCAAAATTTTGATTGACAATCGTAATTTTTTATGATATAGTAATTATAGGCATCTTATGC # Right flank : GGTGGAGAGGAATGGAGGATGGGGGGAGGAATGGAAGATGGGGAGAGGAATGAAAACAATACTATCTCTACGCTTCCAAGTAATGCTTCCTTCCTTCTAACCTTATTTTAATGAACTGAAAGTAGGAAAGAAAAGATAACCTGTAAATGTGAGGCTTTTTTCTTTCTTTTTTTCGTAAAGAAATGAAAAGGAGAAAGGAATGGAAGATAAGGTTAGGGATGAAGCAAAATCATCGGCGATTGATCACTTATATCTTCGATTTTTTATTCTAACCATAAAAAATTAAAACATTCTTTAAAGCATCTTTCATGACTCTTCGCTTTTTTCTTCTTATCCTAAGAGCAAATCCACAATCAGATAAAGAAAAATATTTAAAGTATTACACTAGAAGAGCTAAAATTGTTATAGAAATAGTTGTCGAAAGCCAATGCAGATTAATGAATTTTTTTAGATTTTTAGATGATATAATGGGGTTGAAAACAAATTATCAAAATCATGGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 73897-73236 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUPG01000010.1 Petrotoga sp. 8T1HF07.NaAc.6.1 c2_7_corrected, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================ ================== 73896 30 100.0 37 .............................. TCATGAGTAATCAATGAAAATTCTTCCCAAAAACTTC 73829 30 100.0 37 .............................. ATAGTTAAATAATTGTATCCCTTCGGCACGATAAAGG 73762 30 100.0 35 .............................. TTCCCATACTTCAAAAATATAAACGACCTTTCAAC 73697 30 100.0 39 .............................. TCAATTGATATATCTGTAGTATTGATTAGTTCATAGCGT 73628 30 100.0 39 .............................. CATCTAATCAACTCCTTTTTTAAATGATAGAAACAAAAG 73559 30 100.0 37 .............................. TTTTTCCTCAGGTGTCTTTAGTATTTCTTTGATTTCC 73492 30 100.0 37 .............................. AACTCTCCTATCCTTTTCATAACTTCCTTTTCACCCT 73425 30 100.0 36 .............................. TCATATGAGCCTGAATAAAGATAACCGTTTGAACCG 73359 30 86.7 64 ....C............A..........GG TGGGGAAGAGGAATGGGAACAGTACAATCTTCAACTTCCGGGAATTTCAAGTAGTTCGCTTCCA 73265 30 73.3 0 .C.....G..A.G..T...T.G.......G | ========== ====== ====== ====== ============================== ================================================================ ================== 10 30 96.0 40 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : AAAGAAACATTATCAGAAAACTCTATTGTTTTATCCTTTCTATTTAAAATAAATTTTCCATTTAGCCTTGAAAAAGAAAACAATTTGTACTTTCTTTTATTATAACGAAAGCCCTCGTTATGAACAAAGCTCCTGTATTCAGCATCGTCTATTAGATCAAGAATGAAAGCTTGAATGATATGATTATAATTTACTGGAAGTATTAAGTTATGAAAAGAAAATTGAATGTTTAATCTCATTTCAATTCTCCCGATATTTTAATTTAAAAACAAATACTTTTCTTGTAATATATTTTATCATAGAATAACAAAAAAAGCAAGAAAGTATAAAAAAACGTCTGTCGACCTCCAATAAGGTAAAAATCCCAGGAGATCGACAGACAAGTGTTAAAAATTACAATCCTTATATCATGCATATTTGAATTGATTTTTAACAATTTCTCAAAATTTTGATTGACAATCGTAATTTTTTATGATATAGTATTTATAGCTATCTTATGC # Right flank : AAGGGAAGCAAAGCTAGCGAACTTAAGCATTTTTTCTACTTCTTTTTGATCTAAAGGATAGAAAATATGGTAAGAGTTTTGACCTCATTGTAGATCATTCTTAAGCTTCTACGAAGTATCCCCTAAATTTTTAATCACACTTTAATTAATGGAAAATAGGAATGAGGCGGATATTGATGTCTCCCTTTTGCTCTAAATAATGTAAAATGTAGATAAAACAGAAATTACATTATATCCTAACTTGCTGAGGTTCTATACTGTGCAGTACAACCTTTTAGACAAGCTTTGATGAATGTAAAGTAGAAACGAAAATAATGCCTGCAAACATGAGTTTTTTTCTATTTATTTTGGTTTGAAAAGAATAAAAAGTACGAGAGAATAATGGAAACGTTCTTCCAAACGACTCATTTTGCTAGATGAGAAAATCATTATATTCTACGTATGTGGAATGAGGTACAGGTTTCGACGTTGGTTCTCTTATATCGTCGATATTTTGCTAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 83469-83042 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUPG01000010.1 Petrotoga sp. 8T1HF07.NaAc.6.1 c2_7_corrected, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 83468 30 100.0 35 .............................. CCCATACATATCGCTTGAATATTCAATTAGAATAT 83403 30 96.7 35 .................A............ AAGTCATAGTTGTATATTATGTTGACTTTAATTGG 83338 30 96.7 36 .................A............ ATTTTTGAAACAACCTTTCAAATATATTCGGCATTC 83272 30 100.0 37 .............................. TTGTCATCCAACTTTTTGGCTGCACCAAATATTGCTT 83205 30 100.0 39 .............................. TCATCATCAGAAATACCAGTGGTATTTCTGTTTTCTTTC 83136 30 100.0 35 .............................. TTTCAATCATGCATATCGCCTCCCAAGCCCTCTGA 83071 30 93.3 0 ............................GG | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 98.1 36 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : GGTGATTGCCAATCTAAGGTAAGGATGAGTTAAACCTTTCTCTAGGAAAAAGGTCATTATAAATCCAAGGAGAAAAGACCCAAGAACATTAACTATTAAAGTACCATAAGGCAAAACACCCTCAAGTTTCAAGCTTACCCACCTCGAAAGCAAAAATCGACTAATCGCTCCAAAAAATCCTCCTAACCCTACAAAGAAAATTTCTACCATATTTGGCTCCTTTCTTTTTCCAAAGATCTTTTAACATTATTATATATTATAATTATTCAAAAACAAAAAAAGTTATAATATTTACGGAGACCTTAAAATAGAAGATAAAGAAAATAATAAAAAAAAGTCTGTTGATCTCCAATAAGGTAAAAATCCGAGGGGATCGACAGACAAGTGGTAAAAGTCACAAGCATCATATCATGTATATTTGAATTGAATTTTAACAATTTTTCAAAATTTTGTTTGACAATCGTAATTATTTATGATATAGTATTTATAGATATCTTATG # Right flank : GTTAGATAGGAATGGAAGATGGGTGGAGAAATGTAAAGTAGGGAGAGAATCGGAAGTGGTAATTAGGAATATAGGAATTTGAAACGATGGAAAAGGGTGAATGCCCGATTTTTCGTTGGAAAGTAGGTTGAATGCATAGGACTTAGGAATCTATGAGCAAGAATTTTTTTTGGAAAACAATTTTAGGTAGAAAGAAAATGATAAGATACAATACTTGTTCTTTGACTTGTAAGAAAAATTAGAAAAGAAATTAGACTTTTTAGTCAAAAAATATTATTGCTGATGTGGAAACTTTTTATAGTAATTACTAGAAAAAGTACCAGTGAAATCTTTTTTCGGAGGGCTAAAATAAATGAAGAAAAAAGAAATTAAGCTTAATTTCATTACACTTACTCCTCTGTGGAATGGGAATGTCTGGAATAGAACTGACCAATTACGAGCTTCAGAACTTTTTGGAAGTTTGCGTTTTTGGTTTGAAGTAATTTGTTATTTTTCAGGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : CTTTTTATCCTACCTATAAGGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //