Array 1 165602-163861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGETD010000002.1 Salmonella sp. 32040202-2015-00022-FB-01-SM-01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165601 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 165540 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 165479 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 165418 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 165357 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 165296 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 165235 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 165174 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 165113 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 165052 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 164991 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 164930 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 164868 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 164806 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 164745 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 164684 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 164623 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 164562 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 164501 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 164440 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 164379 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 164318 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 164256 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 164195 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 164134 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 164073 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 164012 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 163951 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 163890 29 93.1 0 A..............A............. | A [163863] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183020-181772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGETD010000002.1 Salmonella sp. 32040202-2015-00022-FB-01-SM-01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183019 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 182958 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 182897 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 182836 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 182775 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 182714 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 182653 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 182592 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 182531 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 182470 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 182409 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 182348 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 182287 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 182226 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 182165 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 182104 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 182043 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 181982 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 181921 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 181860 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 181799 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //