Array 1 1017852-1019526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019198.1 Salmonella enterica subsp. enterica serovar Muenster str. 0315 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1017852 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 1017913 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1017974 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 1018035 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 1018096 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 1018157 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 1018218 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1018279 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 1018340 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 1018401 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 1018462 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 1018523 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 1018584 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 1018645 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 1018706 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 1018767 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 1018828 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 1018889 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 1018950 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 1019011 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 1019072 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 1019133 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 1019194 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 1019255 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 1019316 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 1019377 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1019438 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 1019499 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGACACCCGAGCAAAGAATCAGGGAACTTGAAGAACAGCTTGAGCTGGCAAACCAGAAAGCTGAGTTTTTTGAGTGCGTTATCAACGTCCTGAAAAATGATTACGGGGTAAGTGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1037399-1041150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019198.1 Salmonella enterica subsp. enterica serovar Muenster str. 0315 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1037399 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 1037460 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 1037521 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 1037582 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 1037643 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 1037704 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 1037765 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 1037826 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 1037887 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 1037948 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 1038009 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 1038070 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 1038132 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 1038193 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 1038254 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 1038315 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 1038376 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 1038437 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 1038498 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 1038559 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 1038620 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 1038681 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 1038742 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 1038803 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 1038864 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 1038925 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 1038986 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 1039047 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 1039108 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 1039169 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 1039230 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 1039291 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 1039352 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 1039413 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 1039475 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 1039536 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 1039597 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 1039658 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 1039719 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 1039780 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 1039841 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 1039902 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 1039963 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 1040024 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 1040085 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 1040146 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 1040207 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 1040268 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 1040330 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 1040391 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 1040452 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 1040513 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 1040574 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 1040635 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 1040696 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 1040757 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 1040818 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 1040879 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 1040940 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 1041001 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 1041062 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1041123 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 62 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //