Array 1 25509-26512 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQQD01000026.1 Escherichia coli strain EP151 Scaffold25_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25509 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 25570 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 25631 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 25692 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 25753 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 25814 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 25875 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 25936 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 25997 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 26058 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 26119 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 26180 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 26240 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 26301 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 26362 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 26423 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 26484 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1504-194 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQQD01000003.1 Escherichia coli strain EP151 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1503 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 1442 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 1381 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 1320 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 1259 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 1198 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1137 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1076 29 93.1 32 ............T...............T AGATCGCGCCACGAGGAAACGAATATGAACGG 1015 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 954 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 893 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 832 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 771 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 710 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 649 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 588 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 527 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 466 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 405 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 344 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 283 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 222 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //