Array 1 15817-14889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSYI01000020.1 Diaphorobacter sp. J5-51 NODE_128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15816 28 100.0 32 ............................ CTCAATCGAGGGCTTTTTCATTGGAGACAGCC 15756 28 100.0 32 ............................ ATCTTGCGTGGAACTGCAGTAGCGACGTGGGA 15696 28 100.0 32 ............................ TTTGACCCGAGCGCTTTGCAGGTGTCGAGGTA 15636 28 100.0 32 ............................ AGCACCGAATTGACAGCAGTGATCGAGCCGGA 15576 28 100.0 32 ............................ TACGCACCATTACGAGCGAGCTAGGGCTTGCG 15516 28 100.0 32 ............................ AGCTGGTGCGCGCCATCCTTCCAGGCGCGATC 15456 28 100.0 32 ............................ GCCCATCTTCCACCAGATCAGCCAGCCCTTGC 15396 28 100.0 32 ............................ CATGGCCAGCAGGTCGTGCGCGTGCAGCGCAA 15336 28 100.0 32 ............................ TCAAACCCTTTGAGATATCCGAGGCGGAATGC 15276 28 100.0 32 ............................ ATCTCAGCACTGGCACCGAGTGCGCTGCCCAT 15216 28 100.0 32 ............................ GTCATGCCACTCGGGCGCGGCCAGTGCTGGGC 15156 28 100.0 32 ............................ TAACTGCCGCGCTGCCGGAGCTGCGCCGCAAC 15096 28 100.0 32 ............................ TGCCGGCGCCACAGGGCGGCAGCGCTCTTTCC 15036 28 100.0 32 ............................ AGGGCGGCCAGGCCGTTGAAGAAGATTTCCGA 14976 28 100.0 32 ............................ AGCGCTTGCCCATCAAGGGCGCGGCGCGGTGA 14916 28 92.9 0 ....................T.T..... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CATTCCCAACGGCTCAAAAGTGTCTAGGGAATCCGGGGCGATTCAGAAAGACTACGGCGAGATGGCGAAGAAGACTGTGG # Right flank : CCCCCGCGTCGATCAGCTGCACCGTTCCCAGGTGCACTGGGCATAAGCAGCTCCCCAACTATAGATTACACAATTTAATAGCTAAATATTTAATTTTTAACTATTAAACTGTTAATAATAGGAAATAATGCGAGCCATGCCCTCCCGCAACACCGCCACGCCACCCAGCCCGCCCGAGCTACTGCTGGACAACCAACTGTGCTTCGCGCTGTATTCCGCGTCGTTGGCCATGACCAAGCTCTACAAGCCGCTGCTCGACACCCTGGGCCTGACCTATCCGCAGTACCTGGTGATGTTGGCGCTGTGGGAGCGTGACGGGCTCACCGTCTCCGAGCTGGGCGAGCGCCTGTTCCTCGACTCGGGCACGCTCACACCGCTGCTCAAGCGCCTGGAATCCGCAGGTTTGCTGGCGAGGCTGCGCGACGTGCAGGACGAGCGCCGCGTGCGCATCACGCTCACCGGCCAGGGGCGTGCGCTGCGTGATGGCGCCCAGCCCATCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6915-7430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSYI01000029.1 Diaphorobacter sp. J5-51 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6915 28 100.0 33 ............................ GATAGCGGCGTATCCGACTCCGCGGCACTTTTC 6976 28 100.0 33 ............................ TGTAGATATCGTCCACGAGTCGCTGGCGGGTGC 7037 28 100.0 33 ............................ GATTCTTGCTGAGGTTGTGAAGTATCCTGGGTT 7098 28 100.0 33 ............................ TAAACACACAGGAAAGATTCAAGATGAAAGATA 7159 28 100.0 33 ............................ GTAAATGGCACCCAGGACCTGCTGAGAAGAACT 7220 28 100.0 33 ............................ GTATCTGGCCATCAATCCACCCTCTTTGGCGAG 7281 28 96.4 33 A........................... GTTGCATCCTGCAAAGGTCACGCAGCGCATCTA 7342 28 100.0 33 ............................ GATTTAACGAATAATCAGAAGGCCATTATCAAT 7403 28 78.6 0 .....................A.GCTTA | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.2 33 GCCCGCCCTGCGCGAGCAGGGGTCGAAG # Left flank : TGTGTCGTGGGCCTCGGGCAAGCTGGCGCAGGCTGGCTTTGTGGCCCGCAAACTGGATGTACTGAGCTATGAGCTTCAGCAGGGGTTCAAGCGTGACAAGGCCAGCGGCCGGGGCATGAGGATTCGGTTGCCCGTGGCGCGTCTGCGGCTAGATCTCGAAGTGCAGGATGATGTACATGCGCGCGCTGCATGGTGTGATGGCATCGGGCGCGGGAGGCGTTTCGGGCTGGGTATGCTCTGTCACTGAAAACAAAAAGACCCCTTCCATGATCGGATGGAGCGGGGTAGGTTGCTCCTTCAAAATCGAGTTTACGTTTAGGCTTATGACAAGCCATTTTGAGATCCTCCCGGCCCTGAAGGGCCGGGATTCCTACGGTGCCGCGCATGAGTTGCCTCCTGTACGGTCACTTCGGTGGGTTCCTGCTTCGCTGGGGCGACGCGCTTTGCTTTTTCGGCTTGGCGCGGCTTGATACCCCTCCACCGACGGCCGCGCGATCGAG # Right flank : ATCGCCAGAGAACCAACAGTGCACCGACAGTGACACAAGGCAAAATATCAGCGCTGGCTGCCCATCATCAATCGCGTCTGTATCCCGCCAGTACACCTGTAGTATCGCATTGACTGCAAAATGCAAAGAGCCCGCTTTCGAGCGGGCTCTTTTTTTGAGCAAATACGCCGCGCATCCCCCGACTACAGCGGGCTCGCCGCAAAGCGGCGTAGAGGCAGAGCCACCCCGTTTAGTCGCGGGTCAAGCGGCGCCCGGGTGATTGGCATCATTTCGGTGGCGCCTCCTGATCCCGGATGTATTCCAGCAACTGCTCGATGCTCGCGTGCCCGCCAACGCTGACCACGGCGTAGGCGCTATTCCAGAACCTGGCCTTCCAAAAGAATTTGCTCAAATGCCCTGCGTATTCCTTGCGGATGTAGCGCGAACTCACCGTCTTCAGGTTGCCCACAAAGCGCGCCAGATCCATCGAGGGCTGGCCCTCGATCAGCAGATGCACATGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCTGCGCGAGCAGGGGTCGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1108-422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSYI01000068.1 Diaphorobacter sp. J5-51 NODE_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1107 37 100.0 37 ..................................... ACACCCCCCCTACCCGCAAGCATCTGCACCATGGCGC 1033 37 100.0 36 ..................................... ATGGGCGCCTCGCGAGCAGGGGGACAGCAACGGCCA 960 37 100.0 33 ..................................... TCGGATCCCTTGATTTAGAGCAATGGCGAGACG 890 37 100.0 35 ..................................... ACCTGCTGAGATGACGAAATCTGGCCTGCTTGCCG 818 37 100.0 35 ..................................... AAGAGGGCTTTTGGTTTTGTGGTAGGAAATGGACG 746 37 100.0 35 ..................................... TCGCGAAGAAATAACAACAATGGACATGAGCTTAA 674 37 100.0 36 ..................................... TGGCGGGCTGCAGCCCAGTCCAATGCACTGCCCTGG 601 37 100.0 35 ..................................... AAATTGGACGGTCGGAATAAATCGATCGCGCTTGG 529 37 100.0 34 ..................................... TTCGGCAACTTCGGCTCTATTGTTTTCATGATTT 458 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 35 GTATCGCCCGCCAGCAATGGTGGGCGCGGATTGAAAC # Left flank : GCAGTTCTCGTATTCACGCTAGGGCGCTGATGAACCACACTTACCATCGCGAGCACTTTTGCTCTCAATGCGGCAAGACGCTTTACTACTCGCCGGAGGAGGCATAAAAAATGGACACAGCCAAACTCAAGTACACCGCATATTTCGCGCATTTTTGCGGCTTTCTCGCAGTCTTGCTTGGATTCCTGACGCTGAATGGTTTTATCTCCTACGAGGTGATCAGTAGGACGGAGGCTGTATTGGGCTTGGCAGTTGGCTGTGGAACCATCTATCTTGGGCGTTCGACGCTCAAGATGATTGACCGCATGGAGGGACGGTGACCACCGCGAACGTGTAGTGATGGCCGTGCATCAGTCAGGTTCGCGCGCTTCATAAGTCGTTGTCGCCCCATGCTTTTCCTTCTTGCTTTCGCAAATCATTTTGACCAGTCGAGTGGTCGAATGGAGGTTCGCGCGCGAACAGGAAAAAATACAGGGCTGGCAAAGCCTTGGAAGTGAAGA # Right flank : CTACATGAGGAACCAGCATGACCACACCAACTTACACTCACGCCGAAAATGCCGCCTTCCTGCACGATCTAGCAGGCACGCTGGAGCGCATCGGAGGCCAGGCCAAAAACATCGAACGCCTGCATGACCTGGCTGCGCGTGAAGCTGAGCAAGATCCCGAATATTTGGCCTATGTGAATGCCCGAGTAAGCGCAGCTCTGGAGAACCCTGGACAGCTTCACACGCTGGAGGAAGCCCGCTCGATCGTGCGTTCGTGGCGCAGCACCAAGTGAGCAACGAAGGTAGGATTTGTGCTTGACGTCCTCACCGGCCTAAAGGCCGATGATTCCCGAGCCATGACAGCCCAGGGTTCCTTCTGCAAGACGGCCACGTCCGACCGCGAGAATGTTCCTGGCCGCATTCACATCGCGGTCGTGTACCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCGCCCGCCAGCAATGGTGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.60,-16.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 1 5772-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSYI01000047.1 Diaphorobacter sp. J5-51 NODE_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5771 28 100.0 32 ............................ TCCCCGGCCATCCAAAGACGAAAAAACTAATC 5711 28 100.0 32 ............................ ATGGGCAGTCCCATACGAAGGCGTGTGCTTCC 5651 28 100.0 32 ............................ TGAGGTGCGCGATATGTCCGAAGTTTGAAGGG 5591 28 100.0 32 ............................ GGTCGGCGTCACGATCCACGGGACAGACCCGA 5531 28 100.0 32 ............................ AGCGGCAGGACTGCTATCTCATGGCCCCGGCA 5471 28 100.0 32 ............................ ACGGCAGCGGCCTCTTACACCCCTCGACCACC 5411 28 100.0 32 ............................ GGCTGATTGGCGCAGCGATGCCGGCTTGAAGC 5351 28 100.0 32 ............................ ACGATCCGGGGCTCAAACTACACCGTAAGGTG 5291 28 100.0 32 ............................ ATATCGCTCACGTCAAAGCCGCACTTGCGCAT 5231 28 100.0 32 ............................ TTGAGCTTGGCCTTGTAGTGGTCACGGATGCC 5171 28 100.0 32 ............................ GGTGCGAAATGCCTCAATGGCGGCCAGCTCAC 5111 28 100.0 32 ............................ GCCGTGGCGCTGTGCAAGGAATGCCACCAGGG 5051 28 100.0 32 ............................ TCGGTGGGCGGTTTGCGCAAGGTGCGCTTGAT 4991 28 100.0 32 ............................ TTCCCGTCGTCGGTGTATCCCCGCCAGTGCGC 4931 28 100.0 32 ............................ ACAAGGCTGCGCTGATGGTCTCGTCTGGGCTG 4871 28 100.0 32 ............................ ACGCAGTCTGAGCGCCCGCCTGCCGGGGTGTT 4811 28 100.0 32 ............................ CTGCATTGAGATGGGGGAGCTTGCGTTTAATG 4751 28 100.0 32 ............................ TTGGCCGAAACGTTCATCAAGATTCAAGAAGG 4691 28 100.0 33 ............................ ATCTACGGCGAGCAGATGACGCGCATCCGCGAG 4630 28 100.0 32 ............................ TGGGCAAGCACACCCGTGCCGCGATGTGCATC 4570 28 100.0 32 ............................ TTGGTATGCGCGACGTGCAGCTGCGATCTTTT 4510 28 100.0 32 ............................ TGGACGTGCGAGATCAACTGGCGCGACAACCC 4450 28 100.0 32 ............................ ATGGCCAAGTGCCGCATCAATCTCAAAGACGC 4390 28 100.0 32 ............................ AGGCCGAGTTCAGCGCAGAATATGGCCGCTTC 4330 28 100.0 32 ............................ ATCCGCCAGGTCATCGCCGCCATCGGCCCGGC 4270 28 100.0 32 ............................ GCATCAGCGCTGGACGATGGCATTGAGTGCAT 4210 28 100.0 32 ............................ TAGAGGTACAGCGCCAGCGGAATTGCTGTGCT 4150 28 100.0 32 ............................ AGCGGCATGGGCGGCTATGGCGGCTATGTGGT 4090 28 100.0 32 ............................ ACCCATTGGGCCGCGAAGTAGCGCAATTCGCC 4030 28 100.0 32 ............................ TTTGGCTGCTTGGGCGCCAGTGGGTTGATCTG 3970 28 100.0 32 ............................ TGCCAGCATCCACCAAATCAGCCAGCCCTTGC 3910 28 100.0 32 ............................ TCCTGCGAGGCGGCAATGTCCTGCCGCGAGAA 3850 28 100.0 33 ............................ CCGGAGAACGGATGGCGGGCCGTTCGCAGAAGC 3789 28 100.0 32 ............................ TCAGCAACCCGTGTCGAGTGGTACTCGCAGCC 3729 28 100.0 32 ............................ ATGGAAGTGCGCGGGTAGCGGTAGGTCAGTGG 3669 28 100.0 32 ............................ TTCATAGGTGCCAGGTGCCGCCTGGGCGGTGC 3609 28 100.0 32 ............................ ATCACAAAAAATTCCACCACAGGTGGCCAAAA 3549 28 100.0 33 ............................ CAGCCAACACGTAAACCAGCGCAACCAGCGCAC 3488 28 100.0 32 ............................ TTGGCCACGTAGTCAATGCGGTATGAGTCGAA 3428 28 100.0 32 ............................ TACGAGCGCCGCACCGGAAATCTGGTGGAAGA 3368 28 100.0 32 ............................ ATCGCAACGGGATCGCGCCCATAGACGTAGCT 3308 28 100.0 32 ............................ GCAGGATGTGTGCGAAAAGATCGCAGCTGCAC 3248 28 100.0 32 ............................ TTCGTGCCGCCGCTCGGGTTCGCGCGCACCTT 3188 28 100.0 32 ............................ GTCTGCTGCAGCGCCTCAAGGCCATCGGCATC 3128 28 100.0 32 ............................ TCAAAGAGGTGTTGTCTTGACTGGCCGGAAGA 3068 28 100.0 32 ............................ TTGCTGCGCATCTGGATGGCAGCCACCTTTCC 3008 28 100.0 32 ............................ GCGAAGATATGACCGGCATTCCGTTCGGGCTG 2948 28 100.0 32 ............................ ATCGAGGCCAATGGTTTGAGGTGACGCCTCTG 2888 28 100.0 32 ............................ GTACCCGCTGGAGCCGATCTGCGCGTCGTCCC 2828 28 100.0 32 ............................ GCTGGCATCGGCGACTACGAGGGATGAGCTGG 2768 28 100.0 32 ............................ AAGCCCGAAGCTGCAGCAGGCCCTGCCGGCGC 2708 28 100.0 32 ............................ AGCCATTCCACATCGAAGCGCAGGGGAGAGAA 2648 28 100.0 32 ............................ ACCCAGGAAGCGCCACCGCAGGAGGCGCAGGA 2588 28 100.0 32 ............................ AGGTACGGCCATTGCGCCGCGTTCTGATCCAG 2528 28 100.0 32 ............................ GCCAGCGGCTGAGCCAGTTCGCCCTGCTGCAC 2468 28 100.0 32 ............................ TCCAGCAGCTCGGCGGTGTCGGCCTTGATCGA 2408 28 100.0 32 ............................ TTTGATCTGAGCGGCACGATGTGATCGACTTC 2348 28 100.0 32 ............................ AAGGAACGTTGATGCAGTGAAGGCCTAGTCAG 2288 28 100.0 32 ............................ TGAAAAGCGCCGTGCTGGCTGCATTCCTCCGG 2228 28 100.0 32 ............................ AATCCCTCGCCCCTTCACAGGGGTTTGCCCAC 2168 28 100.0 32 ............................ TGCTGGAAGCCAGCCATGCGCTTGATGCCCAC 2108 28 100.0 32 ............................ ATACACGGGCAAGTCCCCGCCCTCCATCAGTA 2048 28 100.0 32 ............................ AACATGGCGCTCCACGTAATCCACGTAGGGGT 1988 28 100.0 32 ............................ AATCGCCGGCATTGTGGGTTGTTGGAAGGCCC 1928 28 100.0 32 ............................ TGGGCCTCAGTCCATGCCTCGACGCATTCGAC 1868 28 100.0 32 ............................ ATGGAAGCCAAGGCAGAAATCGAGCAGGCATT 1808 28 100.0 32 ............................ TTCCCGTGCGGATGCGATGGGCGGTGGCGTAG 1748 28 100.0 33 ............................ CGCAAGTTCCGCTGGACGCGCGCCCTCTATCGC 1687 28 100.0 32 ............................ ATGAATGACACCACAAGCGCAGCGCCGAGCGA 1627 28 100.0 32 ............................ ATGTCCGGGCCAACCTTCACCATATCCTGCCC 1567 28 100.0 32 ............................ GATTGGCGCATGTGACAGAGGCCGACCATGAA 1507 28 100.0 32 ............................ CATTCGACCCACTCCGGGTTCAGGCGGCCATC 1447 28 100.0 32 ............................ TGGTAGGCGGTGGGCACCATCGTGGAGTTGGC 1387 28 100.0 32 ............................ TGGCGAAACGGGAGGATGAACATGTGTGAAGA 1327 28 100.0 32 ............................ ACGCTGGCGGCCCGGACGCGCCCAGGCCTGAC 1267 28 100.0 32 ............................ TTTCAAAGCTATCGGGAAACCTACCAACGGCC 1207 28 100.0 32 ............................ AATACCAGAGCTGGCGATGGTTGCTTTCTCGC 1147 28 100.0 32 ............................ AACCACCCAGGCAGCGCCAGGGGAGCAGAACG 1087 28 100.0 32 ............................ AGTGCGCCGAACTGCTGCACACCCACCTGCCC 1027 28 100.0 32 ............................ GTAAGCAAGGCGGACATTCGCAGCGGCATCGC 967 28 100.0 32 ............................ CCGCATACCACCGGGTTTGTGCCATCGCACAT 907 28 100.0 32 ............................ TTTGTTGAATGCGTGAACTTCAAGGGCAACGA 847 28 100.0 32 ............................ AAAGCCGCCATCGTCGCTCTCGATCGTGGCAT 787 28 100.0 32 ............................ ACACGATGACGCTGCCGCTGCTGACGGGTGGT 727 28 100.0 32 ............................ TTTGGCTAGTTTGAGGTCAATAGCCTATGGCG 667 28 100.0 32 ............................ TAAGGTAGAGAGGGAGTCCGTGAATCCACAAC 607 28 100.0 32 ............................ ATGTGCACCTGCTTACCAGCTACGGCGATGGC 547 28 100.0 32 ............................ AAATCGTGGAACCGCTGAATCGCTGCGTGCAG 487 28 100.0 32 ............................ TGCAGCATGCCGGGGCCGTCGAAGCCGAAGCG 427 28 100.0 32 ............................ CGTGTTCGCCGCTCGGTTGCCGACCGCCAACA 367 28 100.0 32 ............................ GTGCCGCGCGCCGCCGGCCTGCACTCACCCGA 307 28 100.0 32 ............................ AGGCACGCCAGCACCACGGCCACGTGGCCCAG 247 28 100.0 32 ............................ TGATGCGCGAACTGCAGCAGACCATTGAAGAC 187 28 100.0 32 ............................ AGCGCACGTCGCTGCCCATCACCACTGGGCAT 127 28 100.0 32 ............................ TTGGCGACAGCCTCAACGGTTACGGGGTCGGC 67 28 92.9 0 .......................T...T | ========== ====== ====== ====== ============================ ================================= ================== 96 28 99.9 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AGCGCCTGATGGAGGAAGACTGGCTCAAGGGCATGCGCGACCACACGCAGGTGGGCGAGCTGCTGCCAGTGCCCGCCAACGCACAGCACCGCACCGTGCGACGCCGCCAGTTCAAGACCAACGCAGACCGCCTACGCCGCCGCCGCATGCAGCGCAAGGGCGAAACCGCCGAGCAGGCCGCAGCTGCTATCCCCGACACGGTAGAGCGCCGACCTGACTTGCCGTTTGTGCAACTGCGCAGCAGCAGCACTGGTCAGTCGTTTTGCTTGTGCGTGGAGCATGGCCCACTGCAACCGCTGCCTGTGGCCGGGGCCTTCAACGCCTATGGCCTGGGGCATGACGCGACCGTGCCTTGGTTTTGAGCCTGTTTGACCCTTTTTTCAGGGGCCATGGCAGGGCCTTGTGAATCAAGCACTTACGGAGCACCCTAGGAATTGGGGTGTTCTGGCTTTATGGGGGAATGTTCTTTAAAAACAGAAGGTTGGGTGGGATAGGGTCCA # Right flank : TCGCCCCGGGTTTTCTAGACACCTCTGAGCCTCAAACCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //