Array 1 145128-144899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPAP010000003.1 Bifidobacterium pseudocatenulatum strain 1001275B_160808_D7 NODE_3_length_305690_cov_104.64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 145127 24 100.0 27 ........................ TCCACGGTGCTTTTCCGGGTGTTTGTC 145076 24 100.0 27 ........................ TCCGGAGGTTCATTTTTGGTCTTTAAA 145025 24 87.5 27 ......A.....CA.......... CGCACGGCATCTATTTCAGTCTACGGA 144974 24 100.0 28 ........................ CTTAGGTGCTTATTTTGAGCCGCTTGTG 144922 24 83.3 0 C...........CA.......G.. | ========== ====== ====== ====== ======================== ============================ ================== 5 24 94.2 28 TGTCCGTTTCTGGTGAATCGGACA # Left flank : GTATGGCGGTCGAGCAGGGCCGCGCGGATTTCTTCGCGGCTGACGAGCGTGGCCGGGTCGGGTTGGTTGTCGAAAGCGTGCTGGCGGGCGTCGATCTGCGCCTGCGATGCGGATGGTTCAAAAGTCATGGTTGTTCTCGTATTCTCGTTTTCCGTTCGTGCGTTGTTTTTGCCGGGTTGGTTGTGTTTTGTATGTTCTTGCGATTGTTACGCGTGCATTGCGCCGGTCGTAATCGTAAGAAACTTTGAAAGTGGTTCAGCCGCCCTGCACGAACGTGACGATTTCCAACGTATCGGTGCCCTTGAGCTGCGTCTGCGCACGCTGGGTGCGAGGCACGATCTCACCATTGAGCTCGACAGCCACGCGGTCGGCGCGCAGGCCCTTGCTTTCGATCAGTTCGGCCACGGTGATTGGCGTGGCGACGTTCTCTTCCTTACCGTTGATGATCATTGCGGTTCCCTTCTGTGTCTGTCGTGACACATGCTTTCCTGCACTCCGGA # Right flank : CTCAAGGTTGGTACGAAAAAAGGGTCGCCGAAGGAACCGTACCCTATGAGGTGGTGCGCCCCTCCGTGACCCTAATCACGCGATATTCGGTTATCGCGAACGGAAGATGAGATACGCCTTGCGGCGTGAACAACCCGTCTCCTTACGGCGGCATTACCCGCATCAAGTCCTCGGTCGAAGCTCTATGAGCTCCCTCTCAGCCTTTCGGCTCCCGTTCGGTTGTGCCTTCATCTTCGCGCACGCGCCCGACAAGCTTGCGCCGGTTCACGTTGGGTTAGTCTTGATGTGAACATGTGCGAATCGGCTGAGTGCTTGCAAGGAAGGGGAAGATGATGATGGACGGCGAGTTGGCAGGATTTGCGATTCCTCGGCTTGGTATGGGAACGATGGCTTTGGCGATTGAGGGGCGCCCGGATCGCGATACCGCGATTCGTACGATTCATGCCGGTTTGGACGCGGGTGTTCGCTATTTGGACACGGCTTGGTCATATTATCTGCCG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.10, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGTTTCTGGTGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 92898-90690 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPAP010000005.1 Bifidobacterium pseudocatenulatum strain 1001275B_160808_D7 NODE_5_length_150287_cov_79.3208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 92897 36 100.0 38 .................................... TCGGCCGCCACGGCGGCTATCGTCTCGTCGTCCGCGCC 92823 36 100.0 36 .................................... CATCTCTAAAACCAAGTGGGATAAAGCCGGTACGGA 92751 36 100.0 38 .................................... GCGCTCAGGTCATACGGCACCACGGTGTGTACTGTCAG 92677 36 100.0 40 .................................... TTGCCACAAAGTCCGCAATACAGCTGGAATTGGTAATCAA 92601 36 100.0 37 .................................... AACACAAACAAACAGACGACACGCCCGAAAACAAATC 92528 36 100.0 35 .................................... GGTGAGCACGAGTGGCCGTCCTATATGAGTCGCGG 92457 36 100.0 37 .................................... GATTTGATTAACGAGCTGCTACCGGACGCCGACGTGT 92384 36 100.0 35 .................................... TCCAAGAGGCCGCTCACGAGCCGACCGACGAGGAA 92313 36 100.0 36 .................................... TAGTCGAGCATCTGCGGACTGCTCCACCCGCCTGCG 92241 36 100.0 37 .................................... ACGGTCGTCTTGTGCGATGGCGTCTGGCGTCGCGCGC 92168 36 100.0 35 .................................... TTATAGCGTTCCGGTAGGCGGAACATGTTGCGAAA 92097 36 100.0 34 .................................... CTAAAAGTGGCGTGCGTGCAATGTCGATAGCGTC 92027 36 100.0 35 .................................... AACAACAATGTGAGCACGGCAAACCAACAATTGGC 91956 36 100.0 37 .................................... GGCCGTGAGCGCTGCGATGAGCGTGATGACCAGCATG 91883 36 100.0 35 .................................... AGGATCACCGTGACGATCAGCAACAACTCCACCTG 91812 36 100.0 38 .................................... CGGCACGGAAGACAGGACGGGGCACGTCAGGCGATCGG 91738 36 100.0 37 .................................... TCGTCCTCATGCGGATCCATGAGCTGGTGGACGTGTT 91665 36 100.0 38 .................................... GATAGGCAATGTTTCCATCAAAATTATATCATGCGGCG 91591 36 100.0 37 .................................... TCCATGCTCATACCGGTGGCCGGCAGCGTGTCGCGGG 91518 36 100.0 37 .................................... CCGACCAGCCGGGAAGCCGTCCAGCAGACGAATACTG 91445 36 100.0 36 .................................... CAGCCGCAGCTGGCCGCAGCCGTCAAGGGCGCGACC 91373 36 97.2 36 ...................................G CTGGTCTGCACGAAGGAACTGTGCGACGAGATCGTA 91301 36 97.2 36 ...................................G AGGTGGCCTGAGCGGTAACCTTCAACACTTCGGCGG 91229 36 97.2 35 ...................................G GGAAAGCTATCCGGTCGTTTAATCGCCGATCAGAG 91158 36 100.0 37 .................................... CTCGACGGTGACAAGGTCGGCAGCGTCGTCAACGGAT 91085 36 100.0 36 .................................... GCGCGCGGCGGCAATCCGGAGACTGAAGCCAGGTTC 91013 36 100.0 36 .................................... GAGAGATAATAGTTGGCGAGCCACTGGCTCAGATAG 90941 36 100.0 36 .................................... TTGTCGGAGTACGTGATGGTGAACTGGTGGTTGGCG 90869 36 100.0 36 .................................... TTGTCGGAGTACGTGATGGTGAACTGGTGGTTGGCG 90797 36 100.0 36 .................................... TTGTCGGAGTACGTGATGGTGAACTGGTGGTTGGCG 90725 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ======================================== ================== 31 36 99.5 36 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : GATGATAGACGTCGTGATCACGTGGCAAAAATATTACGGTGCTATGGCGAGAGGTTGCAGTATAGCGTGTTCTTTCTGCGGATTCGGCCTGCAAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTGAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTCACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAATCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : TCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCATCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCACGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATCGCGTTGGGTGTCGCGAGTATCGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //