Array 1 662306-664285 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUK01000032.1 Salmonella enterica subsp. enterica serovar Brancaster strain sg_ww81 ww81_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 662306 29 96.6 32 ............................A GTACTCCGCGTGGGACAATATCGGCAAAATGG 662367 29 100.0 32 ............................. TTTTCGATATTATGCCGCTCGGCCCAATAGTC 662428 29 100.0 32 ............................. ACGACGCTCGAACTGAACGAATTGCTACCCAA 662489 29 100.0 32 ............................. GCATCCAAAATTCTTCAACAATAGTCAACATC 662550 29 100.0 32 ............................. ATTATTCGTCAATTGCCGTTGCAAATAACGGC 662611 29 100.0 32 ............................. CCCGCCGATGCACTCAAAATTAGCCGCCTGAT 662672 29 100.0 32 ............................. ACGCCCTCGTCATCCTGCATGATGTCCATCAC 662733 29 100.0 32 ............................. GAGACCACACGCACTGCGTAAAGTTTTCAGGT 662794 29 100.0 32 ............................. TTAGTCCGGTGACGTACCCCGCGTACCGCGCC 662855 29 100.0 32 ............................. TCCGTGTACCACACGAAATTGCTGACGCTGTG 662916 29 100.0 32 ............................. CATTTAATGCAAAGTAAATCGACCAATAAATA 662977 29 100.0 32 ............................. TCAACACCCTCAATAGATTTGATAGAGTCGAG 663038 29 100.0 32 ............................. GAGCGCCTGCAATCAACGTTTACCGGCTTAAA 663099 29 100.0 32 ............................. ACGAACTGTTATTCTGGCTGCTGTCACAGTCA 663160 29 100.0 32 ............................. CTGTCGTCGCCGTCACTGGGTAAAGGCTGGTG 663221 29 96.6 32 ............................C GCTTCCACGGATTTAACTGCATTCTCGGCCCC 663282 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 663343 29 100.0 32 ............................. GGCGTTTTGTCATACTCGTCCGGTACTCTGCA 663404 29 100.0 32 ............................. TATTAAAAAACCAAAAAGACAAAATGCAATTT 663465 29 100.0 32 ............................. GCAAAAAATGCCCGGATAGGGTTTCCGGCGTG 663526 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 663587 29 100.0 32 ............................. TCTGGCCCATGCAGGCTTTAATTGAGAATGCA 663648 29 96.6 32 .............T............... AATTAGAGCTGGCGCGTATAGCGCTGGCAGCG 663709 29 100.0 32 ............................. ACAAACAGCCGTGGCGATGTTAGTCGCGAAAC 663770 29 100.0 32 ............................. TTCTCTACTACAAATCAGATCTGGACGCGTTT 663831 29 100.0 32 ............................. ATTCCAGCTATATGACACCGACGATCCTGCGC 663892 29 100.0 32 ............................. GGGCACATAATCCACACCCAACCCTAAACCAA 663953 29 100.0 32 ............................. CCGCCACCGTCCGTTATTTCGGTGCGCTGATA 664014 29 100.0 32 ............................. CTCTGAGTGCATTAACCACAATAATTGCTGAT 664075 29 100.0 32 ............................. ATTTTCCGGGGGCCAACTTTGACCGTTCGCGG 664136 29 100.0 32 ............................. GCTGGCCGTATGCGCCTGGAATATCTAATCAT 664197 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 664258 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 680549-681981 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUK01000032.1 Salmonella enterica subsp. enterica serovar Brancaster strain sg_ww81 ww81_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 680549 29 100.0 32 ............................. GACCTGGCTATGCAAACAACGCACGCGCGGCT 680610 29 96.6 32 ............................T GGCCGGTACATGCCAGAACGCCGGTTACGTCA 680671 29 100.0 32 ............................. CCAATATTACGGGAACTATAAACGCAACTAGC 680732 29 100.0 32 ............................. ATGAGTTGATGTGCCGCGCTGCGTCAGACACA 680793 29 100.0 32 ............................. TTGGAAGCCGCAGAGCAGGAGCGGGAAAACTG 680854 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 680915 29 100.0 32 ............................. TCGGCATCTGTGCCATCCTGCCCTCGCGGAAC 680976 29 100.0 32 ............................. GGTATGATATTTGTGAAAACAAACATGTACTC 681037 29 100.0 32 ............................. TCATTGAAGAACCAACACCGGCACTATGTCAA 681098 29 100.0 32 ............................. CGGATATTCGTCTGATTGGCGACCTGCGCCGC 681159 29 100.0 32 ............................. GGTTTCTCTCGCCTGGATATTGACAGGTGAGA 681220 29 100.0 32 ............................. GCGCTGGGCTGAGCAGACACGCTTCGGACAGA 681281 29 100.0 32 ............................. GCGGCATGGAAAGAATGAGCGCCAGTTTTAAA 681342 29 100.0 32 ............................. TCGCAGCGAGTACCGGTATCGCCAGTGCGGTA 681403 29 100.0 32 ............................. AATATGAGCGGATTAGGATATATTCGAGGCGC 681464 29 100.0 32 ............................. TGTCGGAATATGCAGGCTGATTTTTCGTCTGC 681525 29 100.0 32 ............................. GTTCCGGTAATATTGGCTTTTTTAGCTATCAA 681586 29 100.0 32 ............................. GTTCTCAACGGGTGATGTAAATCACCAGAAAG 681647 29 100.0 32 ............................. CCGCTCCATTGCTCTTTACTTATTGTCATCAC 681708 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 681769 29 100.0 32 ............................. TTATTTGTCCGCCGTACCAGGAACGTTTCGCC 681830 29 100.0 32 ............................. GAAATGGAAGATGGCGAGACCGAGGAAACCGA 681891 29 100.0 32 ............................. TTTATGGACGAGTTCTGGAAATGGTTAGCTGA 681952 29 96.6 0 ............T................ | A [681979] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAAGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //