Array 1 140224-138550 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAT01000003.1 Apilactobacillus timberlakei strain HV_02 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 140223 29 82.8 93 ...........T...TT.......C.C.. ATATTTTATTCCATCAGAAATATTATAACATAGAGCATTTCCCGATTATGTGGGGTATACACGTTCAGGTGAACTTATTATTTTGAATGAACC 140101 29 96.6 32 ..............T.............. TTTGAGAAAGATTAAGAATTAATTCCCTTAAC 140040 29 100.0 32 ............................. TCATTTTAATTACTTCCTTTTTTTATTATTTT 139979 29 100.0 32 ............................. AAAAAATAATTTTCTGTTAAGCTATTTTTAGG 139918 29 100.0 32 ............................. AATATTATTACTTTTGTGCATTTTCTTTACAT 139857 29 100.0 32 ............................. ATTGGTCCATATGCGTATTTTTTGGCAGATAA 139796 29 100.0 32 ............................. GAAATGAATAACGATGACGCACAAGATGTTTT 139735 29 100.0 32 ............................. ATTTTTTCGTTATTTATATTGAATAGAAAATC 139674 29 100.0 32 ............................. TACTTTCTAAGCTAGGTGGTTCTGGCCATACT 139613 29 100.0 32 ............................. CTACAAGTGATAACAAATACTCACTAAAAGAT 139552 29 100.0 32 ............................. TATAGAATGTATACCATACATTTTGATTTAAA 139491 29 100.0 32 ............................. CATCTGTTCCTTCTATATGGTAGCTAAGGTCA 139430 29 100.0 30 ............................. ATCTTTTTATTGAGTAACATCTTCATAGTC 139371 29 100.0 32 ............................. TGATGATAGTTCAGATAGTTCTAATTTAGATA 139310 29 100.0 32 ............................. TTGTCATTGGGTTAGTGAAAGATACACAGCTC 139249 29 100.0 32 ............................. CGACTAATAATAGCCAGTAGGTCTTTTAGTTT 139188 29 100.0 32 ............................. CGCTACTATGATTGTTGACAATCAAATGAGCT 139127 29 100.0 32 ............................. GTAATGTTTTTGTACGGATTCCAAAATTTTAC 139066 29 100.0 32 ............................. ATTTCTACATAACCTGTACCTGTGTTCAATTT 139005 29 100.0 32 ............................. ATAAGTCTTAGCATTCAGCTTTTTCTCTTGTA 138944 29 100.0 32 ............................. CGAAGTCAATGACTTAAAAGATAGAATTACAA 138883 29 100.0 32 ............................. AAATTGCTGTGTTGAATAAGGAAAATGGATTC 138822 29 100.0 32 ............................. CACACCCCATTTGGTTAGTTAGGCTAACGTCC 138761 29 96.6 32 T............................ ATTAAACACCTATTTAATGGATGTGTCAATAT 138700 29 100.0 32 ............................. ATATTTTGAACTTGATCTTTGTTTTTGATTCT 138639 29 100.0 32 ............................. TCGTATTTCTTATTACCTAGTTGAGTAAATAC 138578 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================= ================== 27 29 99.1 34 AGAATCACTCCCGCGCATGCGGGATATAC # Left flank : CTAATTTTTCAGCATCTAATGAATCACCATCAATGGATTCTTTTATTATATTTTTTTGATGATCGCTTAAATAATGCCGATATAGCATCAACATTACACCCTTAGTATCTAGAAGGTGTTGCTTCAATGGTAACCATTTCTGCATTCCATTTTCACTTTTACTTTTTTTGGCCCATAAAATGTCAATATCCTTCATATTTGTATCTCCTGCCATTTTTAATTAAATATATTTAATTACTTGTTTCGAAATATATAAATTATTACTAAAAAAATAAAAAATAAAATAAGTATAATAAATAATGTAATAATTATTCCTAATACATCTGAATCAGACATTTAAATACTCCCTTTTATTTAAAAAATACATTTTAATATACTTATATGATAACATTTTTTATTTAAAAAATTCAAAAAAATGAAAAAGTCCACGAATAGTGAACTTTTTTCTCTCGCGTTTGCAAGAAATAAAATAAATAATCTAAAATATGATAACATTTTTT # Right flank : ACTAAAGGATCCGCGGTAAATCAACAATCTAAAATTGCAGAACCAGTATTTTCATTCACTTTTATTATGATAGCATATTCTCAAATCAATTAATATAAAGTTATAAACATATAAAAATTAAGTTTAATTTCTATACTTAATTTTCTTATTTACACCCCACCTAAAAACCGCTATACTTATAAACATACAAAAATAAAACATAGAAAAAGAGCGTTGATCGATAATTATTGGCAGTAATTATCGACCAGCTAACAAAGTAATCGCACTTACTTGTTAACCGTTAACGCTCCTTAGTTATTATATAAGAGCTAAGGAGTAGTTGCAATATATCTAATACATATATGAGGGGACAAGTTTATTACTTGTGCCCTCTTTTTCTATCCAAAAGGATGGATAATAATGAACCAATTTATTAAATTTGATATTGAACTACGCAACGATGACCGTTTAAACAATGATGAACGCTTAGCATATGCTTACTTATACGATCGGATGCATTC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGCATGCGGGATATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 150103-151533 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAT01000003.1 Apilactobacillus timberlakei strain HV_02 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 150103 29 100.0 32 ............................. AAGCTGTTGTGAACGAATACTTGATTGATTAC 150164 29 100.0 32 ............................. GGGCCACCTTAGTTGAACCTATGTATGTGGAT 150225 29 100.0 32 ............................. AGTACTCCTTAACAACTTCTCTAAAGGCTGGC 150286 29 100.0 32 ............................. TAGTGCAAAAGCAGATTCCACTAAAACTCATG 150347 29 100.0 32 ............................. CAACTTTTAGTGGATCTAGACTTGTAATATCC 150408 29 100.0 32 ............................. TAGTTTCGATTTAAACCAGGACTATGTTGGAG 150469 29 100.0 32 ............................. AAAATATGGCAACAAAAAAGAGCAGTTGCAGC 150530 29 100.0 32 ............................. CATCTTGAATAACAAGCTCTGCTTCTTTTTCT 150591 29 100.0 32 ............................. AGAAATTATATTAGAGCAAAAACTAACATTGA 150652 29 100.0 32 ............................. AGATAGCCCTTGATCTTCTCTAGCTTTTTTAA 150713 29 100.0 32 ............................. TTTAAACGCCAAACTGAAGGAATCTATAAAAA 150774 29 100.0 32 ............................. GTAACGCTATGTGGAATGTGGTCATTTTGTTC 150835 29 100.0 32 ............................. CCGTCAATGGATTGTTCAGCATTCACAATTGT 150896 29 100.0 32 ............................. ATGTAAAATATTTATTAAATTATTTTAAATTA 150957 29 100.0 32 ............................. AGGAGTGCTTATATTTACGTTAGTAGGGGATG 151018 29 100.0 32 ............................. GGGAAAACACATCTAGGAAATTATTGTGAATC 151079 29 96.6 32 ............................C GGTAACTGGATTATTAGCGATATTTACATCAT 151140 29 100.0 32 ............................. GAAGTCTTAGAGTTAAATGGCCTTATTGAAGA 151201 29 93.1 31 ...........................TA CTGTGCATGGTGAAGTTGCTCAAGCTCCAAA 151261 29 100.0 32 ............................. CATCAAAGCCTATCAAAATGGTACTTTGGTGA 151322 29 93.1 32 .....T......T................ ATCTAAGGCCTTACTAGCAAACTCAACATCCC 151383 29 93.1 32 .....T......T................ ATACTTTATCTAACTGCATCATATCGTCAAAA 151444 29 89.7 32 .....T......T...............G TAACCAAATCCCATAACTTCACTAGTCTTAAA 151505 29 93.1 0 .....T......T................ | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.3 32 GTTTAGCCCGCACACGCGGGAGTGATTCT # Left flank : TTTAGAACTAATCATATAATTGAAATTGGGGCTTTAAGTTTGTCTAATGGTGATAAAAAATCATTTAATTATTTGATAAATAGTAAATGTAATTTGCCTGAAGAAATTATAAACCTTACTAATATAGATAATGATATGCTAGAAAATAAAGGAATAGATTTATCGTCAGCACTAGAAAAATTTCAATCTTTTATTTCAAATAAAGTTTTAATTGGTTATAATATTAATTTCGACATTGAATTTTTGAATTACAATTTAGAAAAACATAATTTGAAACCATTGATGAATAATTATATTGACCTTTTACCGTTAGTGAAAAAAGAAAAAATGTTTTTACCTAATTATAAATTAGAAACTGCTTTGCTTGATTATGGAATTGATACTACGGTTCCACATCGAGCTTTATTGGATTCTAAATTAATGTGTAAATTGGCAATGAAAGTGAATGGATTTAGTAGAAAGTTAAAAAGAAAAGCTTGATATTTCAGCATTCTTTTAGT # Right flank : TATACATAAAAATAATTATATTTACTTTGCCAATAAAAGCTGATTCTAATATAATTATTAGTAGATTAATCTCGGAGGATACATATGGACTTTTTAAAATTACTATCACTATTTGGTAATAGCGTTGGCATAATATTTAGAACGTGGAAATTTATCTTGTTTATTTTATGTTGTATTGCATTATTTAACCTATTGGGTGGTGATGATGTCGATTGGGATACGGTTGGTCAATATACATTACTTATCGTTATCTTCATTGGTTGCTGCGTAGGTATTCATTATTCCAACAAAAAGAAAGATAAATAAAAAGACTTGCTTTATCAGCAAGTCTTTTATCTTATTATGATCATTATAGCTTTTTAGATTTTTATCTTTTTTATTATTTATTTTTCTTTTATTGAAGCTGTTCCAGTAATATAGACCAAAATAGTTATCACGCTATTATGCGTTCACGGATAGCTCTATTCAGGGTATTCCGGTCCAAACTTTTAATTAAGTTA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGCCCGCACACGCGGGAGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //