Array 1 417099-417328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGE01000001.1 Ruminiclostridium josui JCM 17888 K412DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 417099 32 100.0 34 ................................ TGCATAGGCAAGGGAAAGCGTGAAAACATGAAAA 417165 32 100.0 33 ................................ TTCAAAAAAATGATGGATATTAAAAATGAATTT 417230 32 100.0 35 ................................ ATGACATAAAAATGCATTTGAAATAATAGTAAAGT 417297 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 34 CTCACATCTTGTACACATGCGTCAGTTGCAAC # Left flank : CTCCTTTCCCGAATACGGACAAACCGTGCTGTAACGAAATATTATATGTATTACCTATATCTCCGACTTCAAACGGATAATTTGTAAGTAATCTTTTTTTTACTATTTGAACTTTTGATGAGCAATTCCAATAATCTGAACAGTCCGGATTTGGAGTTCTGGAAGGGTCATCGATTTCGAATGAAACTGTGGAAAGAGATTCCCTTTATTGTCTATTGCAGAATACGGACTGCTGCTGTCTGCCTGCTTACGCCCGAAAATTTCCACACCCATTTCATCGGCTAGTTTATTTACCCTTTTATCTAGTCCTCTGTATCCTATTGTATGTGGGAGGTCATGAAACCGCCTCCTTTGGTGTATAAATGTTCTCAGATATTCTATTGCAGTATCGTTAGGATACATAACTTCTGATAATAGGTTCCACATACCGTAAAAGACACAATCATAGTATGCGTCAGTTGCAACATAAAGAGATTTATAAATGTTTAAAATCTGACTTT # Right flank : CGGCTCACTTGCAAAAAAGCTTACCAATTACATTAGATTGGCTTAATGTGCGAATCAAGAAACTGTTACAACTCAAACATATGTATAAAACGGACGCTGTAAATAATTTTGTGTATGAAACATAGGAAATACTCTTTTCTGGTTAAGAATTTAAGTATTAACCAGAAAGGAGTATTTTTTATGAGCGTATTATCAAAAGAGTTAGTACAGGAAATAATTGCGGAGAATGATTTTAAAAATCCCGGAGAAATAATCTCCTTTTTAAAGGAGGCATTTAAAGATGTTCTTCAGGAAATGCTTGAAGCCGAAATGGATGTTTCTCTTGGGTATTCCCGAGATGAGTCAAGACATAAAATTACCGACAACAGTAGAAACGGTTACTCAACAAAAAAACTAAAGAGTGAATTCGGTCCTGTACAGATTGATATTCCAAGGGACAGAAAAGGTGAATTTGAGCCTAAAATAGTTCCCAAGTACAAAAGGGATGTATCAGGAATTGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACATCTTGTACACATGCGTCAGTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 1387131-1384141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGE01000001.1 Ruminiclostridium josui JCM 17888 K412DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1387130 30 100.0 36 .............................. ACACCTTTTTGTGTCCGTCGCTCTCGTTGTCTATGT 1387064 30 100.0 36 .............................. AAAATACAAATAAATAATAAAAATTCTTATATATTA 1386998 30 100.0 37 .............................. TGAACTAAATTATAGTTGCTGTTACGTGGAGTTTTAT 1386931 30 100.0 36 .............................. AATGCTGAATCCTATAATCAATATGAATATAAGTAC 1386865 30 100.0 37 .............................. ACTTAATGAATAAGAGGGGCTTTCACACGGGAAATAA 1386798 30 100.0 35 .............................. CCTAAAATTTATCTCATTTAAAATAATATTCCATC 1386733 30 100.0 34 .............................. TCTTTACCGAGCTTATGATTCTGTCTTGCATAAT 1386669 30 100.0 36 .............................. TACACCAGCTGAAGCTGGTAAATCTATATGTCCCTC 1386603 30 100.0 35 .............................. GCGAATTGGTTCGTATCTGGTGAATTAGGGGACAA 1386538 30 100.0 37 .............................. TGGAATAGTTATGTACTCTCATAAGATATCACACTTC 1386471 30 100.0 34 .............................. TTATTTTGTTCATAAACTAAGCGTAAAGCCTCAA 1386407 30 100.0 35 .............................. GAATTACAAACAGATATAAATCATGAAGCATTTAC 1386342 30 100.0 35 .............................. CTAAATTATTTTATTAATTACTATGCTTATATATT 1386277 30 100.0 36 .............................. TTTTAGCTGATTCGATATATAATTCATGTTTCTTGA 1386211 30 100.0 35 .............................. GCTCACAGACAGAAAATATTGTATAAAATCATTGT 1386146 30 100.0 36 .............................. TGGGTGCGGGTGCTCTTGGTGGTGCTGTTGCATTAT 1386080 30 100.0 36 .............................. TGTTAAGTAATTCTTCGATGAGATAATTAAGACGGA 1386014 30 100.0 37 .............................. ACAAAAAAAGGATAGCAATAAGCCACCCTTAATTTGA 1385947 30 100.0 37 .............................. TTGCCGACTAGGGCGACTAAGAAAAAGTTTTCGGTTG 1385880 30 100.0 35 .............................. ATCGAAGTCACTAACTTTGGAATGGAGGATGGTAA 1385815 30 100.0 36 .............................. GTAATAAGTGAATGGGTAAATAATGGGAATAACGCT 1385749 30 100.0 36 .............................. CCACAAGACAAGTAACTACAAGTTATGGTGGTGTAA 1385683 30 100.0 35 .............................. GAAGGTTGAAAAGACTATTATTGATACTATGAAAC 1385618 30 100.0 36 .............................. CATACAAAAATACAGGACTAACGCCTGTAATATTGA 1385552 30 100.0 35 .............................. CAGGTTTAACAATAAATTCAGTAAGATAGTCAGCG 1385487 30 100.0 35 .............................. TTTTTACAATTTAAGATGAATGGGTCCGCATTTAG 1385422 30 100.0 36 .............................. ACTATAACAACAAGAATATATTATCTGTCTATCATT 1385356 30 100.0 37 .............................. TTCTGTATGTATCTTAGTCCCGTTTTTAAATACGTTG 1385289 30 100.0 35 .............................. GAAATAGCAATATTAGAATTGTCAAAAAGACTGGA 1385224 30 100.0 37 .............................. AAAGTACAAACCGCTGCTACTGCTGCAAAAAATGCAC 1385157 30 100.0 35 .............................. ACTGAATTATCTATAGAAGATATTGATGAAACTAT 1385092 30 100.0 35 .............................. ACGAACGAAATAACTAAGAATATTGAACATATTAA 1385027 30 100.0 37 .............................. GCTGAAAGCGTAAAACGACTGGGGCCAAAACGGCCTC 1384960 30 100.0 34 .............................. AATATAACTTTTATTTGATTATTGGAGAGCCTGA 1384896 30 100.0 34 .............................. AATTTAGGTGGTATAGACATTTTGGGATAATCAA 1384832 30 100.0 37 .............................. CTATACAAATAAATCATAACAACCTCCGTCAGCTTAA 1384765 30 100.0 35 .............................. ACATCATAATAAACATATTGCCCGTCTGTACGAGC 1384700 30 100.0 37 .............................. GCCGCAAGAGCCGCCAAAGCGTCTGTTTTTACTGTAC 1384633 30 100.0 36 .............................. ACAAGGTTCTCTTTTTTTGTAGGTATAGGCTTATTT 1384567 30 100.0 35 .............................. TTTAATGTGACCTTCAGCGACCTTGTGGGTATTAC 1384502 30 100.0 36 .............................. TCAGGTTGTCGAGCTCGACATAACAAAATGCACGGT 1384436 30 100.0 36 .............................. ATCCGCAAACAATAGCAGTTAAAGGTATGGTTGATA 1384370 30 100.0 38 .............................. TAATATAAGCTTTGATGTAAGCAGTATATACGGCACAA 1384302 30 100.0 35 .............................. AAACTATTGACGTTACTGTTGAGTGTGAAGTCGCA 1384237 30 100.0 37 .............................. CAAAGCGAATCTGATGATAGCGGGTTTTATACAATGC 1384170 30 83.3 0 .......................C.GTTT. | ========== ====== ====== ====== ============================== ====================================== ================== 46 30 99.6 36 GTTTTAATATAAACAGAGTGGAATGTAAAT # Left flank : GTAGCTCACAGTTTAATTGCTTACGATGGCTTTTCGGTCTTGTAGTCCAGGCATAATAACCGCTTCTTGATACATCAAGTATTTGGCACATCTTCTCAACAGGAAATATGAAGCGGTATTTATGAATGATAGAATATTTTACTTCCGGTCTTTCGCGAAGATGGCCGTTACTTTTTTTAGGATTTCATTCTCCATTTCAAGGTCTGCAACGCGTTTTCTAAGACTCCTGAGTTCTTCATCTTCAGGCCTAAGATTACCGCTGCCAGGGAATGCATTCTCTTTATGCTTTTTGTACTCATTTAACCACTTATACATAGTATTATCATGGATGCCGATATCCCTAGCTACACTTGGTACACTACGGCCTTGCTCCAGCACAAGACGGACTGCTTGTTCTTTAAAATTTTTATCATAGCGTTTCATGATGGACACCTCCAACTGGTTTTATTATACCAGCCATTCTGTGTGTCCATCAAATCGGGGGAACTTCAATGCGTAAA # Right flank : ATTTACTCGCCATTGACCAAGTTCTATATTAGCCGTAATCAAGATACTTCCCAAACTTGATTTAATTGCATTTCGCAATTAAGTATACCTGATTATGCTTTCAAAAATGGCACAGAAATGTGGTTTTTGAAAAAATTTTAATATTAAGGTTACTATTAGACAAAATGAATATATAATTGTGTAATAAAATATATTAGTCAAGTATACAACTTTGGGAGGTTAATATGAAAATAGCAAGTGAACGTCTCAGTTTCAGATTCTTTACCCATGAAGATTTTCCGTTATTCTATTCTATATTTTCAAATGAAATTGTAATGAGATATGCATGGATAGATAAAATAGACAACGAAGAAGATGCTCGTGCTTTTTTTGAGGGATATATAAATACAGATGAGAATATTAATAGCGATGATTCCTATGCCTTTGCAGTTTTTTCAAAAAACGGAAATGAATTTATAGGCTTTGCAGACGTACTGGTTCATAGCAGAAATAGTTCAGGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATATAAACAGAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 1391143-1394953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGE01000001.1 Ruminiclostridium josui JCM 17888 K412DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1391143 30 100.0 34 .............................. TAGGTTCTAAGTCATATTCAATTTCACATACTGC 1391207 30 100.0 36 .............................. ACTAGGTTCTAAGTCATATTCAATTTCACATACTGC 1391273 30 100.0 36 .............................. GGTGGACATATATTTTTTATGTCAGGATTCAATTTC 1391339 30 100.0 37 .............................. ATGAGCAGATTTCAAGTTATTGTAGGGCTGTATTATT 1391406 30 100.0 36 .............................. TCAATCAAATTTAGCAAAAAAAGTCGGTGTAACCCG 1391472 30 100.0 35 .............................. ACTATCCGTTCCCGGGTTAACCTCAACAAATATGT 1391537 30 100.0 36 .............................. CTACGGCACAGGTCAAAGGCAATTATCAATAAAATA 1391603 30 100.0 35 .............................. GATTTAACTTTAGATAAATGTTTTGTTGTTAAAAA 1391668 30 100.0 37 .............................. CCTTTCTTACCGACCATTTTCCAACGTTCGTTTTCTT 1391735 30 100.0 36 .............................. TTAAGTACACTGTCCCTGATTGCTTCCTTTTGTTCT 1391801 30 100.0 36 .............................. ACACCCTCTTTCAATGTCTGCAATAGCCTTTAATAT 1391867 30 100.0 37 .............................. GCTGTTGGAGTTTGGATTGAGTAGACCACCGCAAAGT 1391934 30 100.0 37 .............................. TTCCTCCTTAAATAATAATTATAATATTTGCTTAAAT 1392001 30 100.0 36 .............................. AATACTGATGTACAAAGTTTCATGGGTACTTTAAAT 1392067 30 100.0 38 .............................. GAACCCCCTTGTCCCACTTGTTACCAAATATTATATGA 1392135 30 100.0 35 .............................. GTAAAATAACAATAGATTTTGATAAATTTGAGACG 1392200 30 100.0 37 .............................. AGAATATCAATGTGAGGCACGCAGACGAATGAAAGCA 1392267 30 100.0 37 .............................. GAAGAATTGATACGTAAAAAGCCTTTTAGGTTATTTA 1392334 30 100.0 37 .............................. TAATTACACCAACCTTAATACTTGAAAATTCTTTCAT 1392401 30 100.0 37 .............................. AGCAATGTTTGATATGTCTATTATCCCGTCATGGTCT 1392468 30 100.0 38 .............................. ATCTTCTTTTTCATCCATAATTATCAAGTCCCTTCTGG 1392536 30 100.0 38 .............................. ATTTGTCAATTGTACTGCTCATTGCATTTATTGTTTTA 1392604 30 100.0 37 .............................. GTAGAGGAAGGTGTAAAATTATGATTTATTTATATTG 1392671 30 100.0 36 .............................. ATTTACAGCGAAAACAGCCTTTCAAATTTTAAATTT 1392737 30 100.0 38 .............................. TCTGCTAATTATTCATTTGAAGAATTTTGTTCAGAGTT 1392805 30 100.0 37 .............................. GATTCTGGTGATATTTGCGAATGTCAAGAAGATGATA 1392872 30 100.0 38 .............................. TTAATATGTTCATACATTTATAGTTGTCAGGCATGGGG 1392940 30 100.0 38 .............................. TGGTGTTTATGTCGCAAGTGAGAATGATGCATGTAGAA 1393008 30 100.0 35 .............................. TGATTACGGTCCAAATTATTATAATGCAAAATTGC 1393073 30 100.0 37 .............................. GCAGGTAAACAATGCAGATGTTCAGACATTTATGGGT 1393140 30 100.0 35 .............................. CGCCGGTGACAGAGTAATCGCTATACCTGACGTAT 1393205 30 100.0 35 .............................. TTATGTACTTTAAGACGTACATAACTGCTTTTATT 1393270 30 100.0 35 .............................. CATATCATCCGCATTTTCATTGTATAGTATTTAGT 1393335 30 100.0 34 .............................. CTATGCTATATGGCATAAAATGGGGTTTTGTAAC 1393399 30 100.0 39 .............................. TTTTTCTCGTGATGATTATGAAGAATTTGCAAGGAGAAA 1393468 30 100.0 38 .............................. GATGAAATGAAGCGTTTTGCATATTATGCAAAGAAATA 1393536 30 100.0 34 .............................. TTAATATTTTGAGTTATGCAAGGTCTTTTGGTAT 1393600 30 100.0 37 .............................. CCAAAAGATTCTCATAAGCTAGTGTTGTCTTTGAAGT 1393667 30 100.0 39 .............................. AACTGTATTAACTCAGAACATTATGAGCATATGTCAAAA 1393736 30 100.0 35 .............................. TTCATAATTATTAAAATCAAAGCCACTCGTAAGAG 1393801 30 100.0 38 .............................. GAAATACTCAAGACTGTAACTGTTGACGGTGTTGCTCT 1393869 30 100.0 36 .............................. CGTAAAAAATGGTACGGACGTAATTAATTTATAAGG 1393935 30 100.0 34 .............................. CCCACGAATCCCTATCTGACCTTTTAAAATCTCG 1393999 30 100.0 35 .............................. AGGGACAAAAGTCTGATGATGTATCTCAAAAAGAT 1394064 30 100.0 36 .............................. AAATTTTAGGAGTTGAGACTAAAGGTAAACAGGATA 1394130 30 100.0 37 .............................. TTGTGGATGGTGCAGCCTTGGGAGCAGGTGCAATCGG 1394197 30 100.0 36 .............................. TGAAGCGCAAGAATTTGTTGATGAGATTTATAGTGT 1394263 30 100.0 36 .............................. TTAGGTCTTACAAGGAAGTTTCCTTTTTCTATACCA 1394329 30 100.0 36 .............................. GTCATACATCGTAAAGTAAATAATTACAAAATTGGA 1394395 30 100.0 35 .............................. TGAGATGGATTCGTGCAATAGATTAAGTGTAAGGG 1394460 30 100.0 35 .............................. TGTTTCGCGTAGGCTTGTTTGTTGCGGTAATACAA 1394525 30 100.0 36 .............................. GACTTGCAGGCGGGTCCCCTGCCTTTTGCAACTAAT 1394591 30 100.0 38 .............................. TCTTGGAGATTCCTGCTCCGCCACTAAAGCAGTAACCG 1394659 30 100.0 37 .............................. CTAGAAAAGAACTAGCAAAAGAGTTCTCAAAAGCTAG 1394726 30 100.0 36 .............................. AGATACAACTGTCATTTTTGCCTGACCACCGAAACT 1394792 30 100.0 37 .............................. ATACCCTAAGATATCTGTACCCCTGTATTACTATACA 1394859 30 100.0 35 .............................. TCAAAATATTTAATTAACTCATCTCTTTGTTCTTT 1394924 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 58 30 100.0 36 ATTTACATTCCACTCTGTTTATATTAAAAC # Left flank : CACTATGACAAAGCAACTTTGCATAGATGCCTTAAAGCAGGCCATAGGCCGCAGTAAACCAGCTAGAGGCCTGATTCATCATTCTGATCGTGGTGTCCAGTATGCAAGTAATGAATACAAGAATGTACTCAAAAACAATGGCATTACACAAAGTATGAGCCGAAGAGGTAATTGCTATGATAATGCATGTATGGAATCATTTTTTGGTACACTTAAAACGGAGCTTATTTACTTAACAAGGTTCAAGACTAGGGCCGAGGCTCAGTTAGCTATCTTTGAATATATTGAAGCCTTCTATAATCGTATACGTCTGCATTCAAAGCTTGGCTATAGATCGCCTGTTGACTTTGAAAAGTTAAGTAAGACAGCTTAATTAAATTTTATGTGATACAAAGAAAATCGGAGAAATCCCGCCATTCTTTGTGTCTAATTTTTCGGGGTAAGGTCAGTTTATATTAAAACTTACATTCATCACTGTAATTATAGATTTTTATTAGCTT # Right flank : CGCTGACGCCGAAAACATTCAATTTTCAAGGATCACATTTACTGTTTCTGTCGATGTTATAAATTAATTATTAAATATACGACAGATTTTCTTTTAGAAATTATTTACATCTTAATTTTACACGCATCAGAGGTTCTGTCAATCCCCATGGAATTTTACAGTATCAGAGGTCGACAGAAAAAATATTTAAAAGAAGTTTGATGTTTTGTCATCTTCCTTTCCCCAAAATTCTTTCTGCATCCATCTTTCCTCTCTACTTTTGAAAATAATTACAGAATCTCTTTCTTTTCTTATATGCTTTTTAAGTTCCAGCTTTAGCTGTTGTAACAAAGCTGGAGTGATATCTCCTTCAAACACAGATTTCTGCACATGTGTCAGGTATTTTTTGCATATTTTGAAAATATTCCGTGATGCTTTTGCTCCGTTTTCATCCACTTCTACGTCATATATCAGAACTATATACATAATCACCACCAAATTTTAAACCCTTCATATTCCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCACTCTGTTTATATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 4 2493579-2493808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGE01000001.1 Ruminiclostridium josui JCM 17888 K412DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2493579 30 100.0 37 .............................. TGCTTTCATCGTGCCATTTTAAACCTCTAGCCTTATA 2493646 30 100.0 36 .............................. TTCTTTGTATATGATACTGACCATTGATAGTCTTTC 2493712 30 100.0 37 .............................. GTAAACTTTCCTTCTTTTTTCATTGCTGCATTTACTA 2493779 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTTTATAGAATACCTATAAGGAATTGAAAC # Left flank : ATATTAGTATATGATTTTGGTGAGAAGAGAGTAGGCAAAGCATTAAAAATATGCAGAAAATATTTGACATGGGTTCAGAATTCAGTTTTTGAAGGGGAAATAACTGAAGGAAATCTAAAAAAACTAAAAATAGAACTGACTAAAAAGATGGAAAAATCAGAGGATTCAATCATCCTATATACTTTTAACAATACTAGATATACTCACAAAGAAATAATAGGGATAGAAAAAAATGCTCCAACGGTTTTTTTGTGATGTCGATAGGTGATAGTGTAAAAAACATAGGGGTTCGACAGAGTAAGAAAACCATTATATTTGACATAATTAATCAGTTCTAAAACATCTGAAAATCTATATTCTCTGCGGTTTTAGCAAATTCTATTAGTGAAAGGCATGTAAGAGATCATTAAAACCACTTGATAAATATCGATTTTTAATGTAGTTTAAATAGGTAAGCCATATGCATTGATTTTTATGGCTTTTGTTACTTTTGAAAATTG # Right flank : CTCAATATAACAAAGAGTATGTAACATGTTTATTGCAATAGCTTTCTGTAACGAAATGCAATGCAAAAGTGTAACACCCCAAATTGTATTTAGTTGTTAGATTGTTTCATCAGTGAGTGCTTTAACCGCCAGCTGTCCCGGCCAAAGACTATCAAATGGCTGTGATGGACTAACCTGTCGATGAGGGCCGCTGTAAGCTGATCATCATAAAATATTCCGTTCCACTTGCTAAATTCAATGTTTGTTGTGATTATCAGGCTACGCTTTTCGTAGCAGTCTGCAATAACTTGGAACAGCAGCTGAGAGCCCTCTGCATCGAAGGGGATGTAACCCCATTCGTCACAGATTAAAAGGTCAAGTTTACTGAGCTTCTTTAGCATCTGTACCAGTGAGCCATTGGCCTTTGCTGCTAATAACTCATTGACCAATGCAGCAGTTTTGTAGAATCGGACATGTTTGCCTTGCATACAGGCTTCTACACCGATTGCTGTTGCCATGTG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 5 2497698-2499378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGE01000001.1 Ruminiclostridium josui JCM 17888 K412DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2497698 30 100.0 35 .............................. ATAATAAATAGGGTCAAACCTAGTAATATTGTTCT 2497763 30 100.0 34 .............................. TACTACAGTTATCAATATTGCGGATAATATTAAT 2497827 30 100.0 36 .............................. TTACAACTAAATTCTAAAAAAGTTTTTCATATCCTG 2497893 30 100.0 36 .............................. TTATATTGTGGATAACTTTTAATTATTAACATATTA 2497959 30 100.0 36 .............................. TCTACAGATACACAATTGTAATTTATATTGATAACA 2498025 30 100.0 37 .............................. CATAGATTTTGTTAAATAGGGAATACTAACTACTATA 2498092 30 100.0 36 .............................. TTACCTAGTTGTTTCTGCTGAAAATTAAATCATCGT 2498158 30 100.0 37 .............................. TTATATACTTATTATATGTATTTGTCAATACTTTTTA 2498225 30 100.0 35 .............................. ACTGCAATCATTTTATATTCTTTTTCAGCTTTCAA 2498290 30 100.0 37 .............................. TATTTTGCTTTCATCATTTAGCTTTTCTAAACTCATA 2498357 30 100.0 34 .............................. TTAGAATCACAAATAGACGGAGCAAAAAGCACAG 2498421 30 100.0 35 .............................. TTTTCATTGAAGAATTTTTGCATTCTATCAAATAA 2498486 30 100.0 37 .............................. CTAACTTCTTTCATTTGCTCAATTACCCATTTTTTAG 2498553 30 100.0 36 .............................. TAAAATAAATAAAGGTTATATTGAAGGAGCAAAAAG 2498619 30 100.0 37 .............................. TATAATGGTATCCAATGTTGCTCGTAAAAATCATATC 2498686 30 100.0 37 .............................. CTAATAATCTTTGTGAAATTGCATTAAAACCGTTTAC 2498753 30 100.0 36 .............................. TAAAATAAATGCATAAAAAGTTTGACAAACGTGTAT 2498819 30 100.0 36 .............................. CCCTATACCGTAAAATAGTTTTAAATGGATTCTGTG 2498885 30 100.0 38 .............................. AAAAGTGGTGAGCTATCCCATTTTTATCCCTGTTTTTA 2498953 30 100.0 36 .............................. TTACTTTGTATAATATTTATTGCCCAGTTATACATA 2499019 30 100.0 36 .............................. TCATATGATTATTCCAATTATTACTATCATCATTCC 2499085 30 100.0 36 .............................. CTAAATTACCTTTTGATGTTTTGAAACTAATTTGAT 2499151 30 100.0 37 .............................. AATATTTGCGGGTTAGGTGCTACACCGCTTTTAGATG 2499218 30 100.0 35 .............................. GTAGTATAGTCTTTAGGGACTGGCATTTCAGCCAA 2499283 30 100.0 36 .............................. TGTGTCTATGTTTATTTTAGACTGTTTTAGCTGATT 2499349 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 100.0 36 GTTTATAGAATACCTATAAGGAATTGAAAC # Left flank : GCTTTATCTTGCTGGTGTAATGGACCTCTATGGACGTAGGCTTGTAGGATGGGCTATGGCGAACCATATGAGAACGGAGTTGGTATCTGCTGCTCTGAATCAAGCAATTGGAAGAACCGGTGCTAAAGAAGGATTAATAATTCATTCTGACCGGGGAATTCAATACGCCAGTAATGACTATCAAAATCTGCTAAAAAGATATGGATTTGTATGCAGTATGAGCAGAAAGGGCAATTGTTATGATAATGCCCCTATGGAATCTTTTTGGGGCAAACTTAAAATGGAATGGCTAAATGATTATAATTTTGAGACCAGAGCTGAGGCTAAAAAGGCTGTTTTTGAATACATAGAACTGTTTTATAACCGTAAAAGGACTCATTCAGCAAATGGATATATTCCCCCATTCGTGCTGAAGGAAATATCATAGATATTGTAAGAATTAATGAGATAAATAGTGATTCTTGCTGTCTATTTTATTGAGGCAAGGTCAGAGGTTATAT # Right flank : CTATATCTTACCTGTTGTATGTTGATTAGTATGATCATGTTTATAGAATACTGACCTTAATCCAGTTTGATGGACACAAGGAATCCCTATATAATAAAAACATGGAGGGATTCAAATGGCTGAGAGAAAAAAGTTTGATAAAGCATTCAAGGAACAGACCGTTGAAAAAATATTGGCAGGTGAAACAACAGCAAGCTTAATGGCAAAAGAAATTGGAGTGCACTACTCAACAGTAAGAGACTGGTTAATCGCTTATGAAAAGGATGGTTCAAGTGCCTTTCCAGGCAGTGGTAACCTTAAGCCTGACGATGATGAAATAAGAAAATTACGCAGGGAATTAGCTAACCTTAAAGAGGAAAATGAAATATTAAAAAAAGCCGCGGCCTATTTTGCGAAAAATCAGAAATAAACAAGTTTAATTTTATCTATAAACACCGCTTCATATTTCGGATTGCAAAGATGTGTCAGGCCCTTCAAGTATCAAGAAGCGGTTATTATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 6 3119942-3123411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGE01000001.1 Ruminiclostridium josui JCM 17888 K412DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3119942 32 100.0 33 ................................ AAATCCCAATCAAACTCTATGAGGTCAAGTATT 3120007 32 100.0 33 ................................ TGCAAGCATATCCGTTTGACTTGCTAACCATGG 3120072 32 100.0 33 ................................ GACTGGAGTAGCATTGAAAGAACGTCCGGAAGT 3120137 32 100.0 34 ................................ CAAGTAGCTCCTACAGGGCATAAATTGCGAGAGG 3120203 32 100.0 35 ................................ CGGCAGTTCGGCAATCTTCAACGGCGACACAATCA 3120270 32 100.0 34 ................................ AAATCCTAAGTCATGTCTGATTTCGTACCAACCT 3120336 32 100.0 35 ................................ AGTTGAATTTTTTAGTTAGGCACTAATCTTTTTGA 3120403 32 100.0 33 ................................ AAATAGCCATTAAGAAGGTTATAAAATCAAGCC 3120468 32 100.0 33 ................................ ACTTCCCAGTTGCCCAAAAAATCCAAGTACGCT 3120533 32 100.0 34 ................................ TTAATGGCTATTTGAAGCTCTTTCGACAGCTTTA 3120599 32 100.0 33 ................................ AAATTTAATTGTATTATTACTACTTAAATATCC 3120664 32 100.0 33 ................................ TACAAAAGAATAGTCTATTACCTCATCTCCACA 3120729 32 100.0 35 ................................ AATCATGTTATTAGTACAATTACATTTCATACTAT 3120796 32 100.0 35 ................................ CAACAATGGCAGCTACGGATGGAGATTCTACAACC 3120863 32 100.0 33 ................................ TCAGCCTCAGGCCACACACCTGCAGATGCTGGT 3120928 32 100.0 33 ................................ TCCGAAGCAATTAGAAGGGTGTTGAGAGCAGGT 3120993 32 100.0 32 ................................ ATTTTAAATTATCTCCTTTATTTTAATATAAA 3121057 32 100.0 34 ................................ TATACCGCTTGACCCAAATTCTGTGCCAGATTAT 3121123 32 100.0 33 ................................ TGCACCATTGCTGTAATGTACTTTGAATGTAAA 3121188 32 100.0 35 ................................ TTCATCCTTATACTTTTCTTTTAAGTAATTTTTAA 3121255 32 100.0 32 ................................ TATTCAGGCAGCATTGATGCATTTACCTTTAA 3121319 32 100.0 33 ................................ CAAAAGATATGAATATCATGTATTTTAACAATC 3121384 32 100.0 34 ................................ TACAACTTTTGATAAAATGCCAGGTTACAAAGGA 3121450 32 100.0 33 ................................ TATCCACGATACCCTTATCTGTCTTGGCTCTGG 3121515 32 100.0 35 ................................ CTCTTTAGCGTAAATGCAATATTTGTAGTAGCCAA 3121582 32 100.0 36 ................................ CGTTTGTTGGAATTGAACCATTATCAAAATGATATA 3121650 32 100.0 34 ................................ ACAGCTAGTTCCATGTCATTATTCCAATTAAGAT 3121716 32 100.0 34 ................................ TTTTTCAAACTTAATCTATTGCACGAATCCATCT 3121782 32 100.0 35 ................................ CTAAGTATGACAAACCCGGTGAAAACATGGGATAC 3121849 32 100.0 35 ................................ TTCCCGTTGATATGGGTCTTTTTTTGTTTCGTCTT 3121916 32 100.0 35 ................................ CTTACCCCTCCATGTTAGATTCATAACTTATCCTC 3121983 32 100.0 35 ................................ TAGTGGCTTAGTTTTTGAAACGGTTATTCGCCGTC 3122050 32 100.0 36 ................................ ATAATCTGGTAATTTTTTATTTGTTTTGAAATTATA 3122118 32 100.0 34 ................................ CGTTAGGGGTAAATACTAAATACATTCCAAGCAA 3122184 32 100.0 33 ................................ AATTTCAATCTTTTCAAGTGCCTGACACTCAAC 3122249 32 100.0 35 ................................ TGTTACAAGAAGTGCCTTTTATACCAGACAGGATA 3122316 32 100.0 33 ................................ TTTAGCAAGAATGGTTCAACATCAAGAGATTAA 3122381 32 100.0 34 ................................ TACAGGATGCTTATATGATGTTTCTAGCTCTGAC 3122447 32 100.0 37 ................................ AATGTCCCTATAATTTATAATCTTTATGTACATTCAC 3122516 32 100.0 33 ................................ ACTCAACTATATCTCCCCCTTCTTTAATATCCT 3122581 32 100.0 34 ................................ ACAGCCTACTTGTTGACAGGGAAAATGACGTATC 3122647 32 100.0 34 ................................ TATGCCTAAATGGGTAAGACAACTCTGTCCAAAG 3122713 32 100.0 34 ................................ CGTTGGCTCTTCACCTTCTACCGCCTCGGGATAT 3122779 32 100.0 34 ................................ TTGACCATATTTGTGATTATTTTTTGCATAGTCT 3122845 32 100.0 33 ................................ TGTTATAATTGGCTTTGCAATAGATGTCCAGTA 3122910 32 100.0 34 ................................ ATCACAACTGAAATTATGGCTTATGCCTTTAGGG 3122976 32 100.0 34 ................................ TAATTGTGGTCAAGAATGTTTTGAAAATGATTTT 3123042 32 100.0 35 ................................ CGTCAAAGGTTTATGCAACAACTACAAAGTATCCG 3123109 32 100.0 34 ................................ TTGCAGCTACAATTAATTTGATAACTGCGATATT 3123175 32 100.0 36 ................................ ATAATCTGGTAATTTTTTATTTGTTTTGAAATTATA 3123243 32 100.0 37 ................................ TTTCAATACAAGGAATATTACTAACACCCTTTTTAAA 3123312 32 100.0 33 ................................ TTTTTTAATATTACTTATCTCTTGAAACTTTAT 3123377 32 84.4 0 ....................CA....A...TC | TA,A [3123397,3123403] ========== ====== ====== ====== ================================ ===================================== ================== 53 32 99.7 34 GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Left flank : ACGAGTATCCTCCATTTTTATGGAAGTAGGTGAATTTTATGATGGTACTTATTACATATGATGTTAATACTGAATCAGAGGGTGGAAAAAAGAGGTTAAGACGTGTTGCAAAACAATGTATGAACTATGGACAACGGGTTCAGAATTCTGTTTTTGAATGTGTTATGGATTCTGCAAAATGTAGGGAAGTTAAGAATAAATTGGAAAAAATAATTGACAAGGAAAGGGACAGCTTAAGATTCTATTATCTAGGTAACAATTACCAAAATAAAGTAGAACATATTGGCATAAAAGAATCTTTTGATGTAGAAGGAACATTAATTATATAGTGTGCGAATATATAGCAAACATTAAAAGCTAGGGACATTCGCACCTAAAATATAGTATTTCATTAATCAATTTTTAATTATTGATATTAATATTTTTTGTAAATAGACTTTTTATGTTTATTTTTTGTGCAAAATAAACAAGTAGATTTATTTCTTTTGTTTATTTTTGCT # Right flank : CAAAGAAATAGTTAATTGAAATGAGATGCAGCTTTAGATATTTACTCTATATGCAGTATATAGGGATATAATGCGTAATTTTGAAAATACCAAGAGGGGATATGTGAATTAGTATAGGGTACAATAATTATTTTTGATTATACATAAAATGGAAAATTTATAGGACAGAAAACTTTAGCATTACTAAACAGTGCCATGATTATAACAATCTGGATAAACGGGTATACCTTTACGTATGCTAGCCATGTCTTGATTTTCTTATTAATTATGCAAAAGAACTTGGATTTGAAGAAATTTCTGTAGGAGTTGATATTGATAATATAGTTGCTGAACACCTATATGAAAAATGGGTTTTATAAACATAATATTTGAAAATGCAATAATTCAATTTTAGGAATATACATAAGTTGTATAACCTTCCCTTTAGTATGGAAATAATTAGTATAAATAATCATTTTCAATTAAGGGGTTTAATATGACTAAAAGGATAAAAACAATAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA //