Array 1 211548-211099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAHU010000007.1 Legionella brunensis strain 441-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 211547 28 100.0 32 ............................ TTGTAGCATCTGCCGCTGTTATCCCTGTTGCT 211487 28 100.0 32 ............................ TCTGCCTCAATTTCCGCTTCTTCTCGTTTTAG 211427 28 100.0 32 ............................ TTAAACGTTTCATCGTCAATGCTCTTATCACT 211367 28 100.0 32 ............................ AGACAGCTAAGATACGTTCAGCACTTGTAAAA 211307 28 100.0 32 ............................ ATGGTACTGGCAAGACAATTACATCGACAACT 211247 28 100.0 32 ............................ GTTTAAGTTCAATAGAGCGCAAGAATATATTC 211187 28 100.0 32 ............................ ATGATTGAAAATTATTGTGAGCATGACCCAAG 211127 28 96.4 0 ......................C..... | G [211101] ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTTCTTGTGCTTCTCTTTTTTCAAGATATTGATCCAAATACGCCCTACTCTCTTGTGGTACAGGAATTTTTTGGCTAATTCGTTTTGATTTGTGGCGAAGAACATCGCACAAACTTTTTTGTCGATATTGACCGACATTTAAAGAAACCACTTCGGACTCACGAAGACCGGTTCCAAGTAACAAATAAAAAAGTGCTGTTTCCATTAAGGGGTTTTGATTTTTCCGAGTACAGCTTTTAATGCGTTGCTCACAAGCAGACTTAAGCCTCATTAATTGACGTGAGGTCAAACCATTCCAATCAGGTGCATCAGTTTGTAAATCCTTGACTTGCGCTAACGGGTCGCCTGCTAATAATGGCCGTTGTTGATGAAGCCATCGACCTACATGACGAATTGTTGCCATCGTTCTATTAATAGAAGTAGCTTTATAAGGTTTGCCCGTTTTCTCTGAAATTGTTTTACATAAATGTTTCTGAAAATGCTTGCTAACAGCCGGTNGC # Right flank : CAAGAAGATGATTATATTAAGGTGACTTTAATGAAGCACATTATCCATCTTTATTATGCTTGAAATAATATTAACCACTGCATTCTTAAAATGAGCATATAGTGATATGATTTACTTCTAATAAATTTAGAGATTATGTCATCTAACTCCTATTTGAAGAGAAAATGAAAAAAATAAACCCAATCTTCATCCCACTTTTATTTGTTATATTCCTTTTTTTTATAATCTCAACCGTCAGTATTATTCCAGTAGGTTATGTAGGGATACCTGTTCTTTTTGGTCGTGTCCAGACTGGCTATCTTGATCCAGGTATTCATTTTACAAACCCATTCACTCGGGTTGTTAAGTTTGATTTACGTACTCAAAAAGCTGATGAAGAAGGGGTGATACCAAGCAAAGAAATGCTAAATCTGACTCTTAAGACCTCGGTTAACTACCATCTAAATAAATCTAAAATTGTCGATATTTATAGCAGCGTAGGTGTTGATTACTTCGATAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 220767-220914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAHU010000007.1 Legionella brunensis strain 441-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 220767 28 100.0 32 ............................ ATGAAGCAGTGACAATAGGTTCTGATGTACTT 220827 28 100.0 32 ............................ TATATTACTTGACTACAAAACAATAAAGCGTA 220887 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AATCAAAAATGAGGAGGTTATTTAAACGTGGTTCCATAACAGAAGATGATATCAGGCAATACAAAGCAAAAATGCTCTCCAAAAGTATTGATAGCCCTTACCTTGAGTTGGTAAGCGGATCAAATGGGAACAGGTATAGGCGCTACATTGAATTTGGTGAGTTACTCGACCAGCCAGTTTATGGAAAATTTGATCGGTTTGGTCTTTCCAAGACAGCTACCATTCCCTGGTTTGACTAAATAAAGTAATATGAAATCTGTTAAGTTGGAAAGGTTTAAGCGGAAGTTGTAATTGGTTCAAATATTTGAGTCATTTTCTAGAAATGAGATGAGAAATAATCCAAGTTTGAGAATATTTCGGTCTTCTAACTACCAATAATTTCAGCCCTTAAAAATTTTTTAATAAAATCAAATAGATATAAGTTAACTAGAAAAATTGGTTAAATCCATATTTTTCAGTTAACTCTTTGTTGTATCTGTGTTTTAATAGTTTATATTTCA # Right flank : ATTTTCATAATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTAAGCTGCCTATACGGCAGTGAACTTTTACAAGTGCTGAACGTATCTTAGCTGTCTTTTCTAAGCTGCCTATAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 221844-221396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAHU010000007.1 Legionella brunensis strain 441-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 221843 28 100.0 32 ............................ TGAGCAATCAACGGCTTTCTTTTATAGACAAG 221783 28 100.0 32 ............................ TAGCTATTTCTCCTTCTGGATTAACGCTAGGC 221723 28 100.0 32 ............................ TTGTAGCATCTGCCGCTGTTATCCCTGTTGCT 221663 28 100.0 32 ............................ TCTGCCTCAATTTCCGCTTCTTCTCGTTTTAG 221603 28 100.0 32 ............................ TAGCTATTTCTCCTTCTGGATTAACGCTAGGC 221543 28 100.0 32 ............................ TTTCACGCAGGTCAGTTTGCAATTTTCTTAAA 221483 28 100.0 32 ............................ TTAAACGTTTCATCGTCAATGCTCTTATCACT 221423 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCAGAAG # Right flank : AGACAGCTAAGATACGTTCAGCACTTGTAAAAGTTCACTGCCGTATAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTATGAAAATTTCTAAGCTGCCTATACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //