Array 1 250270-247799 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOQ01000007.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N51312 N51312_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 250269 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 250208 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 250147 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 250086 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 250025 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 249964 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 249903 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 249842 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 249781 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 249720 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 249659 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 249598 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 249537 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 249476 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 249415 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 249354 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 249293 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 249232 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 249171 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 249110 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 249049 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 248988 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 248927 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 248866 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 248805 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 248744 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 248683 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 248621 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 248560 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 248499 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 248438 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 248377 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 248316 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 248255 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 248194 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 248133 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 248072 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 248011 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 247950 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 247889 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 247828 29 100.0 0 ............................. | A [247801] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269752-266815 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOQ01000007.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N51312 N51312_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 269751 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 269690 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 269629 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 269568 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 269507 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 269446 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 269385 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 269324 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 269263 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 269202 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 269141 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 269080 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 269019 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 268958 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 268897 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 268836 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 268775 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 268714 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 268653 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 268592 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 268489 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 268428 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 268367 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 268306 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 268245 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 268184 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 268123 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 268062 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 268001 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 267940 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 267879 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 267818 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 267757 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 267696 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 267635 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 267574 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 267513 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 267452 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 267391 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 267330 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 267269 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 267208 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 267147 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 267086 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 267025 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 266964 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 266903 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 266842 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 48 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //