Array 1 98754-95483 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXF01000009.1 Moraxella osloensis strain OG2 NODE_9_length_98812_cov_52.0568, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 98753 28 100.0 32 ............................ AAATTGAATATTGTGCATCGTTATGGCTAAAT 98693 28 100.0 32 ............................ GTTTGCGTCTTTAGGCGTTTCAATGTACCAAC 98633 28 100.0 32 ............................ GTCCGCCCTGTGAAGTCTGCACCCAATGCACC 98573 28 100.0 32 ............................ TGAGCAGCATACACCAACGATTGCCAAAGACA 98513 28 100.0 32 ............................ AAAGCACGTCACCCATCGGGAGCGGATAGTCA 98453 28 100.0 32 ............................ CAAATCTAGTGGGTCAATCATAAACTCACTAG 98393 28 100.0 32 ............................ TTGTTGCGGCTGTGTGTTTTGCGCCTGACTGC 98333 28 100.0 33 ............................ ATCACCAAATTGCACTCTATTGACCGTCTGTGT 98272 28 100.0 32 ............................ TGTCAGAGTTTAAAAAAGTTGTTGGCTTAATT 98212 28 100.0 32 ............................ TTAAAGCCGATTTTATCAGAGCATAAATGCCA 98152 28 100.0 32 ............................ AATCGAAAAAATCAAAAAGCCGCTTCATGTAC 98092 28 100.0 32 ............................ TTGAAGCCGTTACGATTTGCGAAAAGATACCC 98032 28 100.0 32 ............................ GAAATTTAAAAGGTGAAAAGCTGCAAGCCTAT 97972 28 100.0 32 ............................ AACTTAAAAATCCATAGTCACTACGACAATAA 97912 28 100.0 32 ............................ TTGTTTTCATTGGTTAGTGCAATATTTTGCTC 97852 28 100.0 32 ............................ TGTGGGAGACACTAAATATAAGAATGAAAATA 97792 28 100.0 32 ............................ TACCGCGCTAATGCGTGACTTGATACCATTTG 97732 28 100.0 32 ............................ TACGCCTAACTTTTCAAACGTAATGTCTTGCA 97672 28 100.0 32 ............................ AATGCCAAGACCACTTTTAGAGCGATTAATCG 97612 28 100.0 32 ............................ AGTGGCAATCCACAAGCGCGTAATGAGTACAA 97552 28 100.0 32 ............................ AACATCATCAAACCCTTACTTACCATCTAGTT 97492 28 100.0 32 ............................ ACTGTTTATTCCTGAAGAAGCAATAAGCAACT 97432 28 100.0 32 ............................ GCACACACAGGAGCGATGAAATGTTATCTTAC 97372 28 100.0 32 ............................ ATTGAAGAAAATGACGGTTTCTTGGTAGTGCG 97312 28 100.0 32 ............................ GTTACCGCCACCGATTTCGCTGCCGTGATACT 97252 28 100.0 32 ............................ AGTATTTAATTTAAACCCTGTCAGACCAAAAA 97192 28 100.0 32 ............................ ACATCTAAATATCTTGATAACCCTGCAATACT 97132 28 100.0 32 ............................ ATGCGTGAGCGGATGCCTTCTTCCACAAGCAT 97072 28 100.0 33 ............................ ATCTACCCCATTGGGTTAGTAATGTTTTGATAT 97011 28 100.0 32 ............................ CAAACGCAGCAAACTGGCATTTAAGAGTGTCA 96951 28 100.0 33 ............................ TTGCTCATTGTTTTCAACCATGCAAAGCTCTTT 96890 28 100.0 32 ............................ TTGCTGCTCTGCTATCGTGTACCAAACAAACT 96830 28 100.0 32 ............................ TTGAGACTCCACTTGATATCCCATCAACTCGT 96770 28 100.0 32 ............................ AGCTCATTCTTAAGATAATGTGGTTTTTGCAA 96710 28 100.0 32 ............................ AATCTCACGCTCGCCATACAGCACCGCTACCA 96650 28 100.0 32 ............................ AAACGCACCAACTTCCATGACGTTACCTGCGC 96590 28 100.0 32 ............................ ATGCGATTTTAAGGCAACATGGTTTTACGCTA 96530 28 100.0 32 ............................ AATTACTTTAGCAGCCTTACGCTGCGACAATC 96470 28 100.0 32 ............................ TATGGGTTTTGACGAATCAATGGCTTGCACTA 96410 28 100.0 32 ............................ TGTCCTTGTGAGGTGCAGCCCATCATATTGAT 96350 28 100.0 32 ............................ AAACGCACCAACTTCCATGACGTTACCTGCGC 96290 28 100.0 32 ............................ CCAATTAAAGCGTAATGGCTGGATATCATCAC 96230 28 100.0 32 ............................ CGTAAAAGCGCCGCCGACCCATACAACAGCAT 96170 28 100.0 32 ............................ AACATGGTTTAATGCACTTGTTTGCGCTTGTG 96110 28 100.0 32 ............................ AATGAGCCAAGCCGACCTGTGCATGATGAATA 96050 28 100.0 32 ............................ ACTGGCGCATTTTCTGCCAGCTTCTCACCTTT 95990 28 100.0 32 ............................ TGTGTTGTATCAATCAATGTAAAAATCCCACC 95930 28 100.0 32 ............................ AGCTCGATACATTTCACGCCCAACAATCACCA 95870 28 100.0 32 ............................ AACACCACCCAATCACACTAAACAATCTGCCC 95810 28 100.0 32 ............................ CACCAAGTCTGAAAAAGAAACGTGGGCGATGT 95750 28 100.0 32 ............................ GTGACGCGCGCACTGATACCCAAAACATTGAC 95690 28 100.0 32 ............................ ATTGTGGAAGTTGCAAATTCATCATCAACTTC 95630 28 100.0 32 ............................ TATACATTCATAAATTAAATTAATTGTGACAA 95570 28 89.3 32 A............C............G. TGTTGTTATTCACGAAATGGGTGGTCACGCAG 95510 28 75.0 0 A............C.....A..G..TCT | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.4 32 CTTCACCGCCACATAGGCGGCTTAGAAA # Left flank : GATACGCTTAAGGATTGTGTTGAAAGTTGCCTGGTATAATTCGGTTTTGACTATACAA # Right flank : TAATTAGTAAAACAGTGAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTGAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCATTCAATTTCTGTAGTAAAAAAGGTGCCCAAAATCACAAAAGTGGTCAAAATTTCAATTCTCGAAAAACCACGTAAACCCTTGATATCACTGCAATAAAAAAGCCCCAATCAATCGACTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATATGCCTAAAAGGGTCTAACAATCTACTTGCGTAAGTAGGAGTGCCATTTTACCAAAAAATTTTGCTTTTGCAAGTGGTTTTAATTTTTCGCTTCAATTTTTATTGCGCTATCTTCAGCTAAGTTTTCGTTAAGGTTACGTTGTTTTAATACACTCAGCCACTTGGATATACCTCAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2821-92 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXF01000002.1 Moraxella osloensis strain OG2 NODE_2_length_248675_cov_52.2723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2820 28 100.0 32 ............................ AATGGCATGACACGATTAATCAAGTTGAAACA 2760 28 100.0 32 ............................ TGAGATTGATACCCCTGCTGTGGTGCGCAAGT 2700 28 100.0 32 ............................ AAAACATGCGCCCTGTGCTTGCGTATGTGTCA 2640 28 100.0 32 ............................ AGTGAGCGTTTGACGGCACTAAGTGTTCCTTT 2580 28 100.0 32 ............................ AGTCAGCGGCGCCAATTAATATCAATATTTAC 2520 28 100.0 32 ............................ GTTATTTAGAGATAACAAAAGCCCCCGTATCC 2460 28 100.0 32 ............................ AACGGAACAGACTTACCCAGTCTATTGTCCAT 2400 28 100.0 32 ............................ AAATGCCGAAATTAATGTCCGAATACCTTACG 2340 28 100.0 32 ............................ AGCTACGCGGCGCATCCAACCGCGACCAAACA 2280 28 100.0 32 ............................ ATTAGATAAACTCCTGTAGCTGTGGTGGTGTA 2220 28 100.0 32 ............................ GATATATGAGACACGCCACGTTTACGCGCAAA 2160 28 100.0 32 ............................ TGCTAACAATTCTATAAAATACAAGCCTCGTT 2100 28 100.0 33 ............................ CGATTGGGCAAAGTCGCCTTTTGATGAACCCAA 2039 28 100.0 32 ............................ AACACCAACGACTGCATCACCAACTTTATCTA 1979 28 100.0 32 ............................ AATTTAAAAAATGAGTTGTCTGAGTTTCAAAA 1919 28 100.0 32 ............................ CTAAACAATGACAATTCAAATACAGGTGTTTT 1859 28 100.0 32 ............................ TATTTGCTTTTCTGTCATCAAATGGAACATAT 1799 28 100.0 32 ............................ TTGCGATGTGGCACACGCAAACTGGCAAGAGA 1739 28 100.0 32 ............................ ATTATAGATAGGCAAGTCAAAACGTGCTGGAT 1679 28 100.0 32 ............................ GGCCACGCGGTTAGCAATAGCGGTATCGATAT 1619 28 100.0 32 ............................ TTGGGCAACCGCATAGCAATAATGCGCGTGAC 1559 28 100.0 32 ............................ TTGATAACTTTCTTCAGTTTCTTGAATATTAT 1499 28 100.0 32 ............................ TATGTGAGCGGCGGCGGTGTCATCTTGGAGTT 1439 28 100.0 32 ............................ GTTTGCCAAATACCCACAACTCATCAATCAGC 1379 28 100.0 32 ............................ AATGTGACGGCATACTCGCCATAGACACGGCG 1319 28 100.0 32 ............................ AATCGCATCAAATACGATGGCAAAACCTACAA 1259 28 100.0 32 ............................ GAGAACCTACTAGCAGTCGGTCAAGTCGTGCT 1199 28 100.0 32 ............................ TAACAAAACGCGCAAATCCACTGGTGTTAGCA 1139 28 100.0 32 ............................ TCCGCCTTTTCGGGTAACTCAAATTGCACTGG 1079 28 100.0 32 ............................ AATCAAAACAGCACCAGCGATGCCCAACATTA 1019 28 100.0 32 ............................ ATGATGTACCAGTGCCACAGCCATGCGTAGCG 959 28 100.0 32 ............................ AAAAGGAGTCTAAACGCCTTGAGCCGCTAGGC 899 28 100.0 32 ............................ AACAACGCCAGTCATCGCGTGAGTTTTTTGCT 839 28 100.0 32 ............................ AACATACACAAGCATACAATAAAAAAGCCCAA 779 28 100.0 32 ............................ CATATCTAAATTTTTGTGGTTATAAAGCCCAA 719 28 100.0 32 ............................ GTTTAGCATCATGCAGCGTATGGGCAATCAAG 659 28 100.0 32 ............................ AAGTTTGAAGCCCAGCGACATGAAGCAAAAAA 599 28 100.0 32 ............................ AAAAGAGGACGGTTCATGCGGTGAATGTTGTG 539 28 100.0 32 ............................ TATCAAAATCGTGCGAATCACTTACAGTTTTT 479 28 100.0 32 ............................ TACTTGCATGAGTGCCAATCCAATTTGATAAA 419 28 100.0 32 ............................ GTAACCACGACAGCAAGGGGCGACAATCCGCG 359 28 100.0 32 ............................ TTAACCGTATAAATGCTAACAGAGCCTTGAAC 299 28 100.0 32 ............................ AATGCCCCCTTGAGCCAACCGAAGAAGCAGGG 239 28 100.0 32 ............................ GCTATGACGTGGTTAACGGTCAAGTATTGGCA 179 28 100.0 32 ............................ ATGGTTGACCATGAATCTCAAGCGACATTCAA 119 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 46 28 100.0 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCGCTGGGCAAAGGTATTATATAAAAGCTTGGCGGAAGGCTGTGGCTTTAAATTTACCCGCGAGGAAGGCAAAAATGCCAATGATGATATCGCCGATATCGCCAATAGCTACCTTGACCACGGGAATTATATCGCTTATGGCTATGCGGCAGTTGCATTACATGGGTTAGGTATTAGCTTTGCTCTACCGATGCTACATGGTAAAACCCGCCGTGGTGGTTTGGTGTTTGATGTAGCAGATTTGGTCAAAGATGCGATGGTGATGCCACAAGCATTTATTTCGGCAAAACTGGGGCATAATCAAAAAGAGTTTCGGATGCAACTTATCGAGATTTGCCAAGACCAAGATGTGTTGGATTATATGTTTGGCTTCGTTGTAGACACTTGCCAAAAAATTAAATAAAATCAGCTACTTATAAAAAGCACTTTAAAACGAAGTGTCTTGACTGAATTAAAACGTATATAATTGATATCTGGGGATTTTGTCAGAAAATTCTCCA # Right flank : AATTTTCTCGTCTCGCGTTACAAAATACCGCTTCGTTGTAAGCATCCGACCATCCCATCTACCACCATTCTAAAAAATACGAGATAGTGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1721-2108 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXF01000031.1 Moraxella osloensis strain OG2 NODE_32_length_4375_cov_57.1322, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1721 28 100.0 32 ............................ AATGGCGAAATTCAACCCAGATGATTGTAAAT 1781 28 100.0 32 ............................ TATCAAATGCAGTGCTGTGTATATCGCAATCG 1841 28 100.0 32 ............................ CTGTACCATTATTAGTATTAACTGCTAATAAC 1901 28 100.0 32 ............................ TTAGTTTTTCGGTTGTTTCGTGGATTGTGTAG 1961 28 100.0 32 ............................ CACAGATTAAGGATAAAGATGATGATAACCGC 2021 28 100.0 32 ............................ TTCAACGTCACAGTCACAAGACCAGTCGATTT 2081 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : ACGGGAGATTGATGAGCAGTTTGAGAGAAACCAAACGCCAATGCCCAGAGATGCCCAAATAGTTAGACAAATCAGGCAAGAGAAGGCAAAACCAGTTGCGGATAAACTTTATGCGTGGTTACAACAGAAACGCTTAGGCACGACTAAGAATGCCAGTATTACTAAGGCAATTGAGTATTGTTTGAAACGGTGGCAGGCTCTGACACGTTATCTTGAGGATGGCAATTTACCGATTGATAATAATTGGGCAGAAAATCAGATGCGTCCATGGGCGTTAGGCAGAAAGAATTGGTTGTTTGCAGGGTCGCTTGAGAGCGGTCAGCGGGCGGCGAATGTTATGTCGCTTGTCCAGTCAGCTAGGCTTAATGGGCTTGACCCCTATGCGTATTTGGCAGATGTGTTGAGTCGTCTGCCGACGCATCCTGATAGCCAGATTGATGAGCTGCTACCACATGTCTGGATACCACCTCAATAGGGGTATGGTCGGGGGCTTACGCTTC # Right flank : AATGGTTGACCATGAATCTCAAGCGACATTCAAGTTCGCCTAAGGTACTCCCCAATGTCTAGACCAAATAATCACAAAATTAAGATAGAATTGGGTTGATAAAGCACAGTATTAACCGAACTATTGTTATCTAAATAAACCTGTGCAGGGGTATAATATCGAGCGACTGATGCAATCGCTCATAGTTGTAAAACTCAAAATAGTCTTTCAAACCAACTCTGGCTTGACTGACTGTATCAAACTGGCGTAAATACACGCACTCGTATTTTACTGACCGCCAAAGCCTTTCCACAAAGATATTGTCCAACGCCCTGCCACGACCGTCCATGCTCACAGCAATGCCCGAATCAATGAGTGGCGTGGTAAATCTTGGACTGGTAAACTGCGAGCCTTGATCCGTATTAAAAATCTCACAGCGTAACCCATTGTGCAGTAGTTTGCCCACCGTATCAATGCAGAAATCTGCTTCAAGTGTCATTGATAGCGACCAGTCTAAAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3418-3685 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXF01000031.1 Moraxella osloensis strain OG2 NODE_32_length_4375_cov_57.1322, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3418 28 89.3 32 TA.A........................ GCCATGGCTTCAATGATTCTATAGTCCCCCGT 3478 28 100.0 32 ............................ ATTGACGATATCAAAATCCAAAACTATCAACA 3538 28 100.0 32 ............................ AACGATGCACCACATCATCGACAAGTAAATAT 3598 28 100.0 32 ............................ GATGTTATCCGGTTTAGTATCCGCCGTAAAAC 3658 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCATCAAGGTAACACCAAGCTCACTGATGGGCATTGGCTGATAGTACAGGCTTGAGCGGTTAATACCCAGTAGTTCACATTGCTTACGGGTACTGAAATCTTTATTGTCAGGCTCTAGCAGTTGTTTACGAGACTCTAAGTGAGCTGTGAGGACTTTTTTTTAAGCCAGTCTCGTTCACTAATGACTTGCCCCAGTTGCCGATGCAGTTCATCGATGATGGCTTGCTGGGCTTGTTCGTTGTCATGCTGTTTGGTGTTAAAGGCACTGGGTATGACAGCCAAGGCTTGCTTTTTCCAGTTGCTGATTTGGGTTGCATGAACGCCATATTCTGCGGTCAGCTCATTGATTGTCTTGTGCTCTTTGATGGCTTCAATGGCAACTTTGCTTTTAAATTCAGCATTGTGACGTTTACGAACTTTTGTCATTAGATAGACCTCTTTTCTTAAGGGCTATTCTATCTTATTTGCTACGAATTTTTGGTCTAGTTTTCGGGGAGTAT # Right flank : ATCGCGCTGCAATGAGTAGTCAGTCACTTCAAGGTTCGCCATCGCATAGATTATAATACTCCCCAAAAACTAGACCAAAAAATCGTGGTAAATAAGATAGAATAGCCCTTAAGCAAAGAGGTCTATCTAATGACAAAAGTTCGTAAACGTCACAATGCTGAATTTAAAAGCAAAGTTGCCATTGAAGCCATCAAAGAGCACAAGACTATCAACGAATTAACCGCAGAATATGGCGTGCATGCAACCCAAATCAGCAACTGGAAAAAGCAAGCTTTGGCTGTTATACCCAGTGCCTTTAACACCAAACAGCATAACAACGAACAAGCCCAGCAAGCCACTATCGATGAACTGCATCGGCAACTGGGGCAAGTCATCAGCGAGAGAGACTGGCTTAAAAAAAAGTCCTCACAGCTCACTTAGAGGCTCGTAAAGCACTGCTAGAACCTAACAACAAAGATTTCAGTACCCGTAAACAATGCGAACTACTGGGTATTAACCGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10020-82 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXF01000014.1 Moraxella osloensis strain OG2 NODE_14_length_33426_cov_51.3898, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10019 28 100.0 32 ............................ AGCTTCATCATAAATAACTATGTCATTCTCAC 9959 28 100.0 32 ............................ TGCTTTGTTTGGTATGTTGTCTATTCAATCCG 9899 28 100.0 32 ............................ AACCGTTCTTACCGTATGTGACCTCACAAGCG 9839 28 100.0 32 ............................ ACAGCGTTGTAAGTTATCATAGTGGGCTTTCT 9779 28 100.0 32 ............................ GTATAAAAAGCCTGTTTGGGTTGGATACGACC 9719 28 100.0 32 ............................ GCCACGGTGAACCAGCTTAACCAGAGTTTTGC 9659 28 100.0 32 ............................ GCACGTATTTTCATGATGTTAAAGAGTCGCCA 9599 28 100.0 32 ............................ TATAAGCGCGTGTCTTTCGTCAACCATATCAA 9539 28 100.0 32 ............................ TACCACACCTGACACACCATTTGACCCCACAG 9479 28 100.0 32 ............................ GTGGGGGTTGGTAATGGACGCTACAACCGTTC 9419 28 100.0 32 ............................ AGTGAAATCTAATGAAGCGGCAGCATTGGCAG 9359 28 100.0 32 ............................ GCTTGTAAGGTTGACAAACTCACCGTCTAAAT 9299 28 100.0 32 ............................ GCAGTTATGAGTAGTGTCTGTATCAGCTTTGG 9239 28 100.0 32 ............................ ATAACGAGCCATGAAGCCATAGAAAAGCCATC 9179 28 100.0 32 ............................ AGCCGCTCTACCAGCGACTTTCAGCAGTCACA 9119 28 100.0 32 ............................ AACCTATGATATAGATACAAATGCTAATGGTT 9059 28 100.0 32 ............................ AGCTAAACCAAGTAAGCCGACACCAAAAGACA 8999 28 100.0 32 ............................ GACCAAGTGAGCTGATTGCTTTGCGCTGGAAT 8939 28 100.0 32 ............................ AGGTCAGGCATCCAATGATGTTCGAGTATGCG 8879 28 100.0 32 ............................ TAAGTCCATGTAGATACGTTCGATTGGCGTGA 8819 28 100.0 32 ............................ AACTGCAACCTTTGTTACCCCTAGCTTACGAG 8759 28 100.0 32 ............................ TTGAAGATAAGGCAGTTAAAAGGCGCATTGCG 8699 28 100.0 32 ............................ GTGAGATTGAATCAGCAGATAACGGCTCACTA 8639 28 100.0 32 ............................ AGAACAGTTGGCCAGCAAGCTAGAAGGCGCGC 8579 28 100.0 32 ............................ TTATCAAAGCTACTCAAATCGAGTGGCTTTTT 8519 28 100.0 32 ............................ AATTTTTGCAAAAGCACAAAGGCCAACTTGAA 8459 28 100.0 32 ............................ TCACCCCTTTATGTATCGTTGCCATATTCAAA 8399 28 100.0 32 ............................ TTAAAAGAGCTGACCGGCAAGATGGCGCGTAT 8339 28 100.0 32 ............................ GATGAAATCCAGCGCAAATGTGGGCAGGGTAC 8279 28 100.0 32 ............................ AATCGTGGTTTTGATAAAGCCGTGTTAAAACT 8219 28 100.0 32 ............................ CCATGGAACTAGCCAGCAGCATGTGGGATTTA 8159 28 100.0 32 ............................ TCTGCGATATTACACATGACTTTTAAAAAGTC 8099 28 100.0 32 ............................ TCTCGGCTGACCCATGTATGATTTTGCAGCTC 8039 28 100.0 32 ............................ AATGGGATTTTGTTTCCATTAGCATCCAAGAC 7979 28 100.0 32 ............................ CGAAAACCATGCTTTATTATCAAAGCCTTTTC 7919 28 100.0 32 ............................ GAGCGTACTTTTTTTGATGATAACTGCGTTCT 7859 28 100.0 32 ............................ ATCGTCAAATTTTAGACGAAAACCAAGAAATG 7799 28 100.0 32 ............................ CTGAGTTTGATTTTGCCCTAGCCAACATTGAC 7739 28 100.0 32 ............................ ATCAACAACTTCAATTCTACCGTCAGCATCTT 7679 28 100.0 33 ............................ TATGCCACCTAAAAGCATACTTGACTATTCAAT 7618 28 100.0 32 ............................ TAATGCACAACGGCAATATCATTGCAACCAAC 7558 28 100.0 32 ............................ TGTTCCGAATGTGGTTGTTTTACTGATTACTT 7498 28 100.0 32 ............................ TGCTTTTTGTTCATGGGCTACTAAAGTTTGTG 7438 28 100.0 33 ............................ AGCATCAACCAATGATTTAACTTGTTTATGGAA 7377 28 100.0 32 ............................ TATCCCCAGCGACAAGATTTTTTTCGGTAAGC 7317 28 100.0 32 ............................ ATTGAAAGCATTGGAAATAGCATTTGCAAAAG 7257 28 100.0 32 ............................ AATAGCCGTGCAAAATTTACAGGTCATTAAAG 7197 28 100.0 32 ............................ TAGTGTTTGATTAACGATATAGTCAAGTGGTG 7137 28 100.0 32 ............................ TAGCATATCTCTATCAGCTTCAAGCTCTATAT 7077 28 100.0 32 ............................ CTTAGTCCCTTTGAGTGGTGGAGTACAACCCT 7017 28 100.0 32 ............................ GACAAGACGCACAGTAAAACCCTGCTCGGTTT 6957 28 100.0 32 ............................ AACAACACCAACAACACCAACAACGCCAGATA 6897 28 100.0 32 ............................ TTAACCAAATCAACTTTACAATCTGCAACAAC 6837 28 100.0 32 ............................ TTGTAGCCCAGACCATAGCCCCAAGTCATCAA 6777 28 100.0 32 ............................ AATCGCCACCACGTCGGGGACGATTTGGCGGA 6717 28 100.0 32 ............................ GTTTGGCATAGCAACATCACCCAATAACTGCA 6657 28 100.0 32 ............................ ATGAAATAAACACAGACGCTTTGCAGTCGTTT 6597 28 100.0 32 ............................ ATTCAAAGGACTGCCCCTGTGGGTCTTCGGTC 6537 28 100.0 32 ............................ AAAATGACCGATGACCAAATCAAAGCATTTGG 6477 28 100.0 32 ............................ GTACTCGCAATATGCGCGAATCGGTTACAGCC 6417 28 100.0 32 ............................ AACGCCAGTAACTTTATCGCCCACAGTGGTAA 6357 28 100.0 32 ............................ TTTGTTAAAATTTTTCAGTAATTCAGCGAATA 6297 28 100.0 32 ............................ AAAGCAAAAAAAACAAGAGAATTAATTAATGA 6237 28 100.0 32 ............................ TAGGTGTTAAGTCAACACAATGCAGTTAAAAA 6177 28 100.0 32 ............................ TAGTAATTATCCTAAGTATTTAGGGGCTTTGG 6117 28 100.0 33 ............................ TAGTGGTACTGCTCGTTTTTGTACTGATTCGTT 6056 28 100.0 33 ............................ AATAAGCCACAACGACCTTTTTGCAATACCTCA 5995 28 100.0 32 ............................ TTTTCTTTTGCCTGTTGTTGCTTGTCCTCTGA 5935 28 100.0 32 ............................ GCAGCACGGGTGCCCCAGAAGTGGCAGTAGTT 5875 28 100.0 32 ............................ ATCTGCGGTAATCGGAATACGCACGGTAATAA 5815 28 100.0 33 ............................ ACAAAAGGAATACAAGGGCAGAATGGTAATAGT 5754 28 100.0 32 ............................ TAAGTAGTAAATGGCGTTTGCTACTTAGGTGA 5694 28 100.0 32 ............................ TGATTTTGTTTCAGGTGAATATGATTTTGATT 5634 28 100.0 32 ............................ TAGCACTTTTGCGGTGGCTTCTGTTGTGTGGG 5574 28 100.0 32 ............................ GTTGCAAATAAGATTTATGACAATGCAAAAAC 5514 28 100.0 32 ............................ GAGAGCGTGATTAACTGGCGCACCGAGAATGA 5454 28 100.0 32 ............................ CTGCATCGACAACATGGTCAACACCACTGGAC 5394 28 100.0 32 ............................ AGTAAAAAGGTTATTAAAGATGGCAAAATCTA 5334 28 100.0 32 ............................ ATGATGTTGCTCATACAACCAAACGTGCTTTA 5274 28 100.0 32 ............................ ATGAAATCGTCAATGAGTCCTGAGCAATACAG 5214 28 100.0 33 ............................ GCAGACGAGCCGTTAAATGACGGCTTAGTCGAA 5153 28 100.0 32 ............................ ATCAAAACGCTGTTTGACCGACTGCGTTTGTG 5093 28 100.0 32 ............................ GTCGGTAAATTCTGACAATCTCACCGCCAGGT 5033 28 100.0 32 ............................ AATCCCAACCAAGTGGCCGCACAGATTGGACG 4973 28 100.0 32 ............................ TAAAATATATTTTGGCGGCAGAACTGAATGTT 4913 28 100.0 32 ............................ AAAGTTGCTACCAACAACAATGGCTTTCTAAA 4853 28 100.0 32 ............................ AGTACCCGCTTTGGTTGACTTGACTTCGCTAC 4793 28 100.0 32 ............................ TTGCTCCTCGGTCAAGCTATGGCCAGTAAGCG 4733 28 100.0 32 ............................ GGATTTAGTAAGGGTGCTACAGGTGACGGTGC 4673 28 100.0 32 ............................ AGCCCAAACACAACAAACTGCATCGACACCAG 4613 28 100.0 32 ............................ ATTCCCAGATTTTGCCATTTCATAAATTTTAC 4553 28 100.0 32 ............................ TTTTCCCCCTTAGAAGTCCTATCTTTTTTTAA 4493 28 100.0 32 ............................ AACAGTAGTACAATATGGCGTAGGGTCAGTTT 4433 28 100.0 32 ............................ ATACAGCTCATCGGTGTTCTTGTTGCGGGCAA 4373 28 100.0 32 ............................ TCATCTATGGCACCTTAGCAGCAGACACTACG 4313 28 100.0 33 ............................ TCAATCGATGCAGTTTCAGCATCAAAGATTTGA 4252 28 100.0 32 ............................ TACCCCGACATTGTAGTAAACAAAGACACATT 4192 28 100.0 32 ............................ TGTACTCAATAGCCTTGCTCAACACTTTTTAT 4132 28 100.0 32 ............................ TAATTGCATCTCAATAAGCCTATAATCGTAGT 4072 28 100.0 32 ............................ TGCATACTTCTCGCTATACCCTGCCGAAATAG 4012 28 100.0 32 ............................ AAGTCTGCCATTTGTTCTTCAAATGTGATAAC 3952 28 100.0 32 ............................ GACTTATGAAACACGAAGGCGGTTATGTAAAT 3892 28 100.0 32 ............................ TGGGCAAGTCGTAAACTGCTTGAGTCAAAAGC 3832 28 100.0 32 ............................ GCGAACATATAGACGGTTAATTTCCGCCATGT 3772 28 100.0 32 ............................ CAGTGGAGCCATTAAGCCAACGATGTTTACGG 3712 28 100.0 32 ............................ TTTGTCAACGTGATTTATGAGTAACTGCACCA 3652 28 100.0 32 ............................ ATGCGCATCAAGGTTGACTTGATGTATGACAA 3592 28 100.0 32 ............................ ACTGTACTAGCCGCAGCTAATACAGCAGACTG 3532 28 100.0 32 ............................ AAGCGAGGTGCAAGATGACTAAAACCACGATA 3472 28 100.0 32 ............................ GCTCTAACTTCTCAATCAGCGTTTTCGGTTGT 3412 28 100.0 32 ............................ AATATCCCCATGCTAAACTATCGGCAATGGCT 3352 28 100.0 32 ............................ GAGTTTAAACAGGCAGTCAAGGCACTGCCAAT 3292 28 100.0 33 ............................ ATGGCGGAAAATGCCAAGCGACGAAAACCCGCA 3231 28 100.0 32 ............................ AAGCGAGGTGCAAGATGACTAAAACCTTAACA 3171 28 100.0 32 ............................ TCTTAAAACCTTATGATTGGCTTTATTCCACA 3111 28 100.0 32 ............................ AGTGATTGATGATAAACGCCCAAAGAATATGC 3051 28 100.0 32 ............................ TCAAGATGGCCAGTTTCAAACAATCGAAGCAT 2991 28 100.0 32 ............................ ATACTCGATATCAAGCTTGGTCGCTTCAATCA 2931 28 100.0 32 ............................ TAAACAAACTGCCCCACTCAACGACACCCAAG 2871 28 100.0 32 ............................ TACCAAATTCCAAAGGGTCGGTGATAGCAGGG 2811 28 100.0 32 ............................ AAAACAAAGGCAATCCGATTGATAGTACGATT 2751 28 100.0 32 ............................ TAAACAAACTGCCCCACTCAACGACACCCAAG 2691 28 100.0 32 ............................ TTGTTTGATAAATTGCTCAGAAATACTGGTTA 2631 28 100.0 32 ............................ AATTTGAGACACAAGGGAAACTTAGCACTTCT 2571 28 100.0 32 ............................ CTGTGCGGATAGTTGCTTATACGCATATACCC 2511 28 100.0 32 ............................ GCATAAGGATAACACATGGCTTTTTTAGTAAA 2451 28 100.0 32 ............................ GTGATAGCCAATACATCGACCAAACCTTTAGG 2391 28 100.0 32 ............................ TACCGTGATGCTTGACGCTTTTTGCGCAACTG 2331 28 100.0 32 ............................ GTTGACAGCGTTATACTCCAATGCCGTGCTAA 2271 28 100.0 32 ............................ TTGGGTGTTCCTGTTAGTCGGTATAACTCTTC 2211 28 100.0 32 ............................ AAAGTAGCGATTTCATCATGGTCAAAAAGATT 2151 28 100.0 32 ............................ ATTCGGTAGTTTTACTAGGCTATCTTCGGGGA 2091 28 100.0 32 ............................ TGTTCAACTTCACAAGTTTTTACGCCTTGCTT 2031 28 100.0 32 ............................ TGACGAACTCTATCAGCGTAAATTAACCGTTT 1971 28 100.0 33 ............................ ATGCACAAGGCGTTGGGCTTAAATAGGATTTGC 1910 28 100.0 32 ............................ TAAAAAATTTTGCTATAGCAAGCATGGCTACA 1850 28 100.0 32 ............................ ACTGGGTCGCCCCTTGGTATTATTACGAAATT 1790 28 100.0 32 ............................ ATTTCGCACTTGGAACAATTAACGCTCCGTCC 1730 28 100.0 32 ............................ ACCATTAAATAAGGTGGACAAACCGCCAAAAC 1670 28 100.0 32 ............................ AGCGCGTATTTTTAAGCTTTATAAATCTACTA 1610 28 100.0 32 ............................ ATTGTGTTGGGATAAGGGCGACATGATCCAAA 1550 28 100.0 32 ............................ AGAAAACAACGCTATTAAATGGCGTTCTAAAA 1490 28 100.0 33 ............................ ACGAATTGCACCGCTTAAGATTTTTTTACCTAA 1429 28 100.0 32 ............................ TTGCAAATCAGTGATTTTATTAGCAATCTCAT 1369 28 100.0 32 ............................ TTGCAAATCAGTGATTTTATTAGCAATCTCAT 1309 28 100.0 32 ............................ TTGCAAATCAGTGATTTTATTAGCAATCTCAT 1249 28 100.0 32 ............................ ATATAGCGATGTTAAAGCAAAAAATAATGAGA 1189 28 100.0 32 ............................ ACATGGAATGCTTTTGCCTGTGTAGCTTTTTA 1129 28 100.0 32 ............................ CAGATGATTATTATTTGCGCTCGATACGATTT 1069 28 100.0 32 ............................ GTTATTCTCGGTTACTTGCTTGGTGATGATTT 1009 28 100.0 32 ............................ ACCAAAAGTTATGCTAGTATCAATATTCGGTA 949 28 100.0 32 ............................ ATCACCGCTATTAGGGGCAGAAGCAACAGCGA 889 28 100.0 32 ............................ AATGTTTGCGCCTGGGCTATCATGATTTGCAT 829 28 100.0 32 ............................ GACACCCCGAACATCAGCACCAACGCCAGTTA 769 28 96.4 32 ....................T....... GATAAGTACAAGACCAGCAACGCCCCACATAC 709 28 100.0 32 ............................ ATCACCGCTATTAGGGGCAGAAGCAACAGCGA 649 28 100.0 32 ............................ TGCAATAGTTTAGATAGGGGCAGATGCAGGCA 589 28 100.0 32 ............................ AGCCAGCGATTTACGAGAGTTTGTAACCGAAA 529 28 100.0 32 ............................ TGTCATGATTGAAGTGGTCATTCATTTTGCCA 469 28 100.0 32 ............................ ATTATCGAAAAATGGGCAAATGATTTTACTTA 409 28 100.0 32 ............................ AAAACAAGTAATGATACGACATTAAAGTTAGT 349 28 100.0 32 ............................ TTTCGATGAGTTCATAATAACAGATTGAAAAT 289 28 100.0 32 ............................ TGTAAGGTTACATCTAACGCTCGTTAAGTTAC 229 28 100.0 32 ............................ GTTTGCGTCACAAGTCAACGTAGGCAACGTGC 169 28 100.0 32 ............................ TAAATTCTAAATGAGAATTATTACCATATAGT 109 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 166 28 100.0 32 CTTCACCGCCACATAGGCGGCTTAGAAA # Left flank : TTGATCGATTATGTGCATTTGACCAGTATCAAAGAAGTGGGCGATAAAGCAACAGGTCATGTCATTGTCAGACGCTATCGATATAAAGACTTTGACAAAAAGGTGTCGGAATTTGCCAAGTTTAAAGGCATTAGTGAAAAAGACGCATTGGCTCATTGTCTTGAGCATAAACGCCCTATCAAACGCTATCCTTTTATCAGCTTAAAAAGTGAAACCAACCAGTCTGATTACAGATTATCGATTTGGCAAGAAACCGCCAATGAAGCTAAAACAGGCAGTTTTAATACTTATGGCATCAATAATATGTCAAATGACGTGACCGTGCCTAATTGGTAAGTTATAGTTGAATTATAAAGTAAGGGTGAATAACCCTTATTTTTGACTCAATAAAAATAGGTATAAATTTCAATCAGTTATATCTAGGCAAAAAATGTAGGGTAAGAAGGGTATTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCT # Right flank : AACAGGAACAATTTTACCTCCGTCATATATAGTTAAAACTGTAATATAATAAGCATTTTAAACCAATACCACCATGCCCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //