Array 1 19985-23371 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOL01000036.1 Vibrio cholerae strain P12-CHT68-05 36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19985 28 100.0 32 ............................ AATGTCGTGTCGCTTAAAATTGATGCCTCCGT 20045 28 100.0 32 ............................ AAGACATTGCAAACAAGCAAGTAAGCGATCTA 20105 28 100.0 32 ............................ TTCTCTATTGATGCCCATTTTCCGGTCTTTTC 20165 28 100.0 32 ............................ TGCGTACTGCGTGACAATCGGCGATACTAAAT 20225 28 100.0 32 ............................ AAGTATTGCACGTTAACATTTTCGACATAGAG 20285 28 100.0 32 ............................ ACAAGCGAAGTGTCGAGCCAGCGATTAAGTAT 20345 28 100.0 32 ............................ TCGCAAAAGCGGGGCTTTTTCTTGTCTAAAGT 20405 28 100.0 32 ............................ GAGAACCAATTTTCAGGCATGTTTTTATGCTT 20465 28 100.0 32 ............................ ACAATATTTAGGCTGTTCAGGCTCATCTTTTT 20525 28 100.0 32 ............................ GCTAGATGGACGTACAATTACATGAGGGAAAT 20585 28 100.0 32 ............................ ATAAGTAAGGTCAAGCATGACGCCAACAATCA 20645 28 100.0 32 ............................ TTATCGAGAAGATCAGCAATCTCTCTTAGTTC 20705 28 100.0 32 ............................ TCAATGCGCAGCCGTGCAAAGATGTTTCGCTT 20765 28 100.0 32 ............................ AACCGAATCACTAATTCACCTAGCCATCTCTC 20825 28 100.0 32 ............................ TGTCAACCTGACTGAAGATCCGGCAGCTTACG 20885 28 100.0 32 ............................ TGATCCTGACTAAGTTTGAACGCGGTTCTCCA 20945 28 100.0 32 ............................ TCACGCTGCATGAATAGCATAAGCGCTTTAAA 21005 28 100.0 32 ............................ ACCAGCCCTAAAAAGGTCGTTTCTCCTTTCTT 21065 28 100.0 32 ............................ AAAGCAAGACGCTGAAATTTTGTCAAACTTAA 21125 28 100.0 32 ............................ TCAACTCGAATCTTAGCTGCGTAAGCTTCATC 21185 28 100.0 32 ............................ AGTGAGGGCGCTATACGCTCTATTGGGTTTTT 21245 28 100.0 32 ............................ TCGTCCCTAGTCAGAATCGGCGCTGGTGCGTC 21305 28 100.0 32 ............................ GTCAACGCTTCCGGTGATGGTGTTGTTTCCGC 21365 28 100.0 32 ............................ AGCATCTTGCAGTAGACATCGCGGAAACGGCG 21425 28 100.0 32 ............................ TGCTTTCTCGGCGACTACCGGAGAAATACCGA 21485 28 100.0 32 ............................ TTGGCGACACTCTTCGCGATCAGCGCAAGCGG 21545 28 100.0 32 ............................ TTAGCATAATCGCGGCTAACTTCTTTAAACTG 21605 28 100.0 32 ............................ ATTAACAACGCAGAGGCTATAACCTTAGAACT 21665 28 100.0 32 ............................ TTGACTACATTGACGACCTAAACAAGAGAGGC 21725 28 100.0 31 ............................ CCTTCGTATTTTTTTTCTGCACACTCGTGGC 21784 28 100.0 32 ............................ AAATGGCCTTACTTTTAAGTATTCATCATCAC 21844 28 100.0 32 ............................ ATCAATCCCTTGAAATGTTCCGGCCGGAATAA 21904 28 100.0 32 ............................ TGCCACGTTAAGCCAAATCATGAAAGGCACCT 21964 28 100.0 32 ............................ CAAGATATGTCGAGTGATGAAATCGCCGAAAA 22024 28 100.0 32 ............................ TTGTTCAGTGATTGCGGCGTGGTAGCCGTAGC 22084 28 100.0 32 ............................ ACATCAGAAACGTGGAGAGACAAAACCACTGG 22144 28 100.0 32 ............................ TGCTAGATTTCCTTATTGATGAACTCGGGGAT 22204 28 100.0 32 ............................ GCAAAGGTGATTAAGGTTTTTAAGATGAAAAA 22264 28 100.0 32 ............................ ATGTACTTGGCATTGATCAGTTGCATTTCGCT 22324 28 100.0 32 ............................ CAAAGGCAGAGCGTGAAAGCGCAATCAATTAC 22384 28 100.0 32 ............................ AATTATATACTTTTGGCGTTGCAGCTTCAGCA 22444 28 100.0 32 ............................ GTGAAGATTAGACGCCAGTCGCGCACCTTTAT 22504 28 100.0 32 ............................ TTGCTTCCTTTTCGATTCCCAATTAAACACAA 22564 28 100.0 32 ............................ ACCACTGGATAACATCACCAAAGCTCAGATCA 22624 28 100.0 32 ............................ TCAAGGTCAGAACTACAACATCCCCTATCAAG 22684 28 100.0 32 ............................ AATTTTTTAAACCACCTAAACGGCGTTGTACT 22744 28 100.0 32 ............................ TCTAACGGCGACCGGATGTTAGACCCTATAGA 22804 28 100.0 32 ............................ AAGATGGCATAAGCGAGCCATTTACTTATTGC 22864 28 100.0 32 ............................ AGACTGAATTCTCTTATGGTGGCGGTTTGCAG 22924 28 100.0 32 ............................ AGTATAGATACCCTCTGCACCCTCCACACCAC 22984 28 100.0 32 ............................ TATGATGTTCTCTAAGCTATGTTCATCGATCA 23044 28 100.0 32 ............................ GTTGACCCATACACGCACAGCAGCAAAGGCCG 23104 28 100.0 32 ............................ AGTTGTTGATGATCATGCCCATCGGCGAGTAA 23164 28 100.0 32 ............................ TTGATATGCGATAGAGATTTCGGTCGCTGTTC 23224 28 100.0 32 ............................ TAGCTGACCGTTGCTGTGGTTTACTTCTGAAC 23284 28 96.4 32 ...........T................ AATTGTCACGCAATACGCGGGCAACGAGAAAA 23344 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 57 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACCGTGCCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATAGTTGCAACGGGTGATTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTGTTTTTATCGGTTTATTCTAT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCAGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6802-5875 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOL01000122.1 Vibrio cholerae strain P12-CHT68-05 122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6801 28 100.0 32 ............................ TGTACGGCGTGCCAAATTTCCAGCCCCGCAAA 6741 28 100.0 32 ............................ TAGCAACGGCTCGAACTCTAGCCCATGTTCTT 6681 28 100.0 32 ............................ TGCTCGCTTTCATGGTTCGTGCATCTGAAACC 6621 28 100.0 32 ............................ TTTAACTGGCACTCTTGGCAGATCATTCTTGG 6561 28 100.0 32 ............................ GTTGCGGCAGTGATGAAAGCCAAAGTGAGCAA 6501 28 100.0 32 ............................ TTGGAGACGCTAAATGACAAGCTTAGCGCCAA 6441 28 100.0 32 ............................ TACACAACAGTGCAGGGCGACACTTGGGATAT 6381 28 100.0 32 ............................ AAGAGAAACTGAAAGACTCTTCAAGCGTTGAA 6321 28 100.0 32 ............................ AGTAACGCAAACAACAACAACGGAGCATGTCA 6261 28 100.0 32 ............................ ATTTTATTGCCTCTCTCATGTTAGAAATTCTT 6201 28 100.0 32 ............................ TGTCGCTCTAACCCTACCATCAACAAAAAAGC 6141 28 100.0 32 ............................ GTATTGACGATACCCCTAATTCTTCATCGTTT 6081 28 100.0 32 ............................ TAGAACTAGCAGATGGTTCTATCTTCAATACT 6021 28 100.0 31 ............................ GCTAATGTGCTTTTACCCACGCCGCCTTTGT 5962 28 96.4 32 ...........T................ TTTAAACCCAATTCTCGATAACGCTTTATTAA 5902 28 92.9 0 .................T......A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACTTACTAACAATCGAAAAAGAGCTCGGTCGATGCTTAAAGGGTAAGTCAGTTTCGGTAATATCAACGGGCTTTAACAAAGCATGTCCCAGTTGCTTTTCAGAGCCTTTTCAACTGACAGCAGACTATCTTGGGCTTGTTTACAAAGGTTGTACGTATGTATCGGTCCAATCTGAAGATGACCTAAGTAAACTAAAAGAGACAACTAGACAAGCGTTGGAAATTGTCACATAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGTTTGAGTTTAGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTTATTTATATTGATAATAAATCCAGTAAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGCTTTTTCACATTGCAGGTAAGCATTTTTTAAGCTCAAGAAGTAACATATATGCACTAGAATCACTGAGTTGATATGGATTGAAATTGCTACTTGATGAGAATTTCAAGACGAGTGGTTTAGTTATGCTTGATATAGGAATGTATCCCATAGACCAGTCTTGAAAATCTCTGTTACGTATCTCTTGATAATCTAAGATAACAACCCTGTTGTGGCGGTGATCTTTTATGATGTTGTTGTACAAAAGATTAACTTTTTCTCTATCACCTTCTAAACATTGAAGAAAATATTCATTGTTAAAATAGAGTACGCCAGTTATATCTCGTTCAAAGTTATATTTTTTAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //