Array 1 3552-4449 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CWMK01000042.1 Listeria monocytogenes isolate LM50, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
      3552	    36	 100.0	    30	....................................	GCAATAGACCAGTTAGGTGTCACAGGTGCG 	
      3618	    36	 100.0	    30	....................................	GATAGTAGTATAATAACTGTGCTAATATGG 	
      3684	    36	 100.0	    30	....................................	TTCGTACCATAGTATACACATGCAGGGGCG 	
      3750	    36	 100.0	    30	....................................	CATATAGATGTTTCCTTTCTACTCGTATAT 	
      3816	    36	 100.0	    30	....................................	AAATATTATTCAATGCTGTAACTGTAAAAG 	
      3882	    36	 100.0	    30	....................................	TACTTTTATTGTCTGCTAAGAATACTACTA 	
      3948	    36	 100.0	    30	....................................	ATTGTACAAATTCCAAGTAACTCATCATTA 	
      4014	    36	 100.0	    30	....................................	TTTTTCACGTTTGTACTGTCTCTCCTCGTA 	
      4080	    36	 100.0	    30	....................................	TACGATGTTAAGCGGTGGAGTAGATCAGTA 	
      4146	    36	 100.0	    31	....................................	TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC	
      4213	    36	 100.0	    30	....................................	TTGGGCAAAATGACCGTAATAAATCCATTC 	
      4279	    36	 100.0	    30	....................................	TTAGCACTTATATAGAAGCCCCGCCCCTAC 	
      4345	    36	 100.0	    30	....................................	AGTGATGGGGAAGAGATTGAACTTATGTTT 	
      4411	    36	  86.1	     0	.............A.....C.....T.A.......G	|                              	A,A,C [4436,4442,4445]
==========	======	======	======	====================================	===============================	==================
        14	    36	  99.0	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                               	       

# Left flank :   GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG
# Right flank :  GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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