Array 1 6706-132 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJO02000012.1 Aggregatibacter actinomycetemcomitans serotype f str. D18P1 contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6705 28 100.0 32 ............................ TGCTCAAGCACCGGTTCAACAGAATTTTGTTC 6645 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 6585 28 100.0 32 ............................ TGTGGGCAGTAGTTATTGTTCACAATAATTGT 6525 28 100.0 32 ............................ TAATAAAATAAGTTTTTATTATTGGGACGTAG 6465 28 100.0 32 ............................ TTTACGTTTTGTTTCTTTTTTAATTTGACAAT 6405 28 100.0 32 ............................ TATTTCAAATTATTGAGTCAATCGTATAAAAA 6345 28 100.0 32 ............................ TTTTTGCAATTTCTGGACGAATAAATTGTACG 6285 28 100.0 32 ............................ ATTAAAACAGCAAATCCTGCGTATCCGGTACG 6225 28 100.0 32 ............................ ATTTTTGTTATTTGCTGATGGCTGATACGTAC 6165 28 100.0 32 ............................ TTCTAGGTGAAGCTTCCACGATATTTAAACGT 6105 28 100.0 32 ............................ ACTACAAAAATTTAAAAAATCTAACCATTTAT 6045 28 100.0 32 ............................ TTTCAATCTTCAACAAGGTACCAATTATAGAA 5985 28 100.0 32 ............................ TATCGCAAGTGAAGGTGAAACAATTTGTATTT 5925 28 100.0 32 ............................ AATAGAAGGTAGCGAAGAACAATGTTATTCTG 5865 28 100.0 32 ............................ TTACACATAAACAAACAAGCTTTATTACGATA 5805 28 100.0 32 ............................ ACCCACGTCTTTACTACCATAAGATGAGGCAA 5745 28 100.0 32 ............................ TTTGTTTTGTTCAATGTGTTGAAAAGGATTAG 5685 28 100.0 32 ............................ TTGTTGAAGATTGAAAGGTAAATTATCTTCAA 5625 28 100.0 32 ............................ ATACGGCCAAGTTGTTCGTAAGACAATGAAAC 5565 28 100.0 32 ............................ TAAGATGTCGCCTGTCGGCGTCACATCCGTGC 5505 28 100.0 32 ............................ TGTCTTAATGGCAGGATTTTTTTTGCCTGTTG 5445 28 100.0 32 ............................ CTTAAAACCTTGCTTTTGTGCACTTTGTACAA 5385 28 100.0 32 ............................ TTTTAATGGCGCGATTAAACTACATGATTTAT 5325 28 100.0 32 ............................ AACATGATATTCCGCATTCACTACAGTATTTA 5265 28 100.0 33 ............................ CAAATGCCCACGATTAAATAGTCGCTTCATTCT 5204 28 100.0 32 ............................ TATATCAAATACAGATATAGTAGGAACTTTAA 5144 28 100.0 32 ............................ ACACTTATTTGTTGCGTCGTCTCAGTCAGCGT 5084 28 100.0 32 ............................ ATTGATTGTAGGTTTGAAGTTCATAAGGAATG 5024 28 100.0 32 ............................ ATGAATTTTGACCGTTTAGAAATGATAAGAAA 4964 28 100.0 32 ............................ AAATGTAAAGCATGTTATTACTAAGAAAGACT 4904 28 100.0 32 ............................ CTTGCTTGCGTCTTTCTCTATCCCAATATTTA 4844 28 100.0 32 ............................ TTCTCTAGTTTTGAACACACAAAGCCAATAAT 4784 28 100.0 32 ............................ TTTACGTTTTGTTTCTTTTTTAATTTGACAAT 4724 28 100.0 32 ............................ AGAAGGTGAAAATTCAGCGTAGGTATCACTAA 4664 28 100.0 33 ............................ TTTCCTATTTTTTCATATCCCACAAATTATAAG 4603 28 100.0 33 ............................ CTGCTCAAGCACCGGTTCAACAAGCAGTAGGTA 4542 28 100.0 32 ............................ TGTAATTGACTAGGTACTTCTACGTTCATATG 4482 28 100.0 32 ............................ ATTATCAGTTTTTACAAATTTCCAACCTATCC 4422 28 100.0 32 ............................ ACACTTATTTATTGCGTCGTGTCAGTCAACGT 4362 28 100.0 32 ............................ ATCGGAAGTAGTGTTAAATTTAATGACTTACG 4302 28 100.0 32 ............................ ATATTTTTAAAACAGCTTTATTTAATAATGTT 4242 28 100.0 32 ............................ TTGATAAGTTATAGTTTCTGCGTTTACTATTC 4182 28 100.0 32 ............................ TCATCATTTTCTTTTGCTTTTAGTTTGGAATG 4122 28 100.0 33 ............................ TGCTTTGTGTTTGCTAATCTGTGTATCTTCCAT 4061 28 100.0 32 ............................ AAAAATGCAATTACGTAAAGTGCTACTGGACC 4001 28 100.0 32 ............................ AAATAGTTTTAAAATGAAAAATACACCTGATA 3941 28 100.0 32 ............................ TACGGTGAAAAAGCCAATTTGCTTGAAGTTTT 3881 28 100.0 33 ............................ CCAAGAACCTCCTCCAAAACTATATGAAGATCC 3820 28 100.0 32 ............................ AGAAACTTCATATACAGCTTTTACATGCATTA 3760 28 100.0 32 ............................ AATAAATTGTTTGGTTTGTATTTAATTTAAAC 3700 28 100.0 32 ............................ AGGCACTTATTAACCAAATACTTAATCAAATT 3640 28 100.0 32 ............................ ACCCACGTCTTTACTACCATAAGATGAGGCAA 3580 28 100.0 32 ............................ ACGATATTTAAACGTGAGATAAGCCCTTCTTC 3520 28 100.0 32 ............................ TTTACCGTCTGCCCATTTAGTGACAATTATCA 3460 28 100.0 32 ............................ TGTTGATAAAGGCCAATGGTTATGTGAAAAAT 3400 28 100.0 32 ............................ TGACATTGCATTAACTAATAGTCGTGTTTTAG 3340 28 100.0 32 ............................ TGCTTGATTTAAAACTTCAAGCAAATTGGCTT 3280 28 100.0 32 ............................ AAAATCAAAAACATCTATTTTTGCTGTACAAA 3220 28 100.0 32 ............................ ATTGCAAAACAAACTAATGTGCCACGATCTGT 3160 28 100.0 32 ............................ ACCGGCATGGGCTCAAGGTGTGAATCCTAACG 3100 28 100.0 32 ............................ ATAGCCCCTATATCAATTGGCGGCATGTAATT 3040 28 100.0 32 ............................ TATTACTTTTATAAAAGACCTTCTTGTATGCG 2980 28 100.0 32 ............................ TTGTGCATTTAAAAAGCGTATAAATTGTGGGT 2920 28 100.0 32 ............................ TGATACATTGTAGGCACGACCACATATACCAC 2860 28 100.0 32 ............................ ATTATCAGTTTTTACAAATTTCCAACCTATCC 2800 28 100.0 32 ............................ TCTAAACCCGCACCATTACTAAACTTATGCCG 2740 28 100.0 32 ............................ TTCTAGACCCTGTGGGCAGTAGTTATTATTCA 2680 28 100.0 32 ............................ TCGGTACAACAACCTTGATAAGTTATAGTTTC 2620 28 100.0 32 ............................ AATTACTAGGAATAACTTCTATTTTTAAAACT 2560 28 100.0 32 ............................ AAAACCCTTTATTAGCATTACCCACGGGTGCA 2500 28 100.0 32 ............................ AAATGGATCTGATTCTGTTAATACAAACCCAA 2440 28 100.0 32 ............................ AGGCACTTATTAACCAAATACTTAATCAAATT 2380 28 100.0 32 ............................ TACAAAGGAAAGATAATGGAAATAAAGTACCT 2320 28 100.0 32 ............................ TGAAACAAGTTCTCCTAAACCAACAAAATTAT 2260 28 100.0 32 ............................ CAACGTAAAGGTAAATCAAAAGAATATAGAAA 2200 28 100.0 33 ............................ CTAGAAGACCGCCATTTAACGAAAATCACATGA 2139 28 100.0 32 ............................ TTATTGGCGAGGTATCATATTCGATCAGAAAA 2079 28 100.0 32 ............................ TTTTTGCCAATTGCCATGAAATAAGTCGACAA 2019 28 100.0 32 ............................ ATGGACAGGCTCAAATAGATAGAAATTGCCGA 1959 28 100.0 32 ............................ TTTATAAACGTCCATAAACACGCCTTCTAGCC 1899 28 100.0 32 ............................ GAAATCTGAAACAGATTTTTTTAACGGTTCTT 1839 28 100.0 32 ............................ TTCTTCAACAAGACTATCGCTTAAAGAATCGT 1779 28 100.0 32 ............................ ATCATAATCCACTGCAAAAGATTGACCGATTT 1719 28 100.0 32 ............................ AACAGACTCAGCGCCTATTTCTCGATTCCGGT 1659 28 100.0 32 ............................ ATACAGGGCGAATTTGGTCTTACTATGTCACA 1599 28 100.0 32 ............................ AAGAGGAGAGTGTTGAAGTCTCATTCATGGTT 1539 28 100.0 32 ............................ ACAATCAAAACTCCAATTTTTTGCCCTTTTAC 1479 28 100.0 32 ............................ AAGAAGAAAGTATCAATGCTTTACTTTCATAT 1419 28 100.0 32 ............................ TGATTTATTAACGGTTATCAATGAATTTTCTT 1359 28 100.0 32 ............................ TGCGATAAACATAGTTTGCTCATGGTCGGCTG 1299 28 100.0 32 ............................ CGATGGATATATAAAAGAAATTGCACGTTTTA 1239 28 100.0 32 ............................ ATATTATTTAAAGCGTCTAATATAATGTCTGC 1179 28 100.0 32 ............................ TAACATACCTAATAGAAACAAGAAAAAAGGTG 1119 28 100.0 32 ............................ AAAATGTTCCTTACAAGAACTAATGCGCCATT 1059 28 100.0 32 ............................ TTCTAAAGCTGGTTGATGATATGGACTATCAT 999 28 100.0 32 ............................ TGATGAAATTCAAAAAGGCACAACGTGGATTG 939 28 100.0 32 ............................ AACAAAACAAAGTAATTATTTAAACCGGTCCC 879 28 100.0 32 ............................ TCCTCCAAAATTATATGAAGACCCTACTTATC 819 28 100.0 32 ............................ ACACGTATTTGTTGCGTCGTCTCAGTCAGCGT 759 28 100.0 32 ............................ AATACCGACAAAACAAAACATAAGCGATCTTA 699 28 100.0 32 ............................ ATAAAAATGATCAAACGACGACCATCTAATAA 639 28 100.0 32 ............................ AAAATGTAAATCGGTATTCCCCAGTAAGTGAT 579 28 100.0 32 ............................ AACAAAACTATGTGCCATTGGTTGTTGTGTTG 519 28 100.0 32 ............................ ATGGCAAATTGGAAAAAACTCACAAATTTTAC 459 28 100.0 32 ............................ TACAAAGGAAAGATAGTGGAAATAAAGTACCT 399 28 100.0 32 ............................ ATTGGAAAAACTAAAATTAGCGGAAATATTTA 339 28 100.0 32 ............................ ACCGGTAGCAGATGCTATTGCTAATCGCTTAA 279 28 100.0 32 ............................ TCGGTCCAGCAATCGCCGAAAAAAACACATTG 219 28 100.0 32 ............................ AAATACGCCGATTAAATTAATCATGGTCAGTC 159 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 110 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTTTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //