Array 1 7337-6970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHZB010000039.1 Virgibacillus pantothenticus strain 179-C4.1 HS NODE_39_length_41240_cov_222.669776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7336 32 100.0 35 ................................ CTAAATCAGATAGGATTGTTGTTAGGTTTTTACCT 7269 32 100.0 35 ................................ TCGTACTGGTGTATGTTTAGACGACTGATATGCGC 7202 32 100.0 36 ................................ GCAAACGAAAACCTCTATGATTATTTAAAACCATTT 7134 32 100.0 35 ................................ TAGTTGTGCACGTACCATTTCGGCAATGCTTGCAT 7067 32 100.0 34 ................................ ATCTGTAAAACGGAGCTGCCTTTTGCTGCCTCTT 7001 32 90.6 0 .......................A..A....C | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 98.4 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTCCTTAATTTATCTACTTTTAACTTAATCATTTATTTTTTCGATAAATATAGCGGTATTTTGCTTAAGTTTGTCGTTTATACTGCTGGAGTAATTTAATTTTACTTTTCAATTTACAGATCACCCTGTGAATGAAATTGAAACACCAATTATGCATTTTGATACTAATTGTCGAAATAATTTAATCTACAAAGAGGAAAACATCATTTTTTGATTTTATTTGCACATATTTTAAGATTCTTCCACTTGTACGATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATTTTGTTTTTGGTAAATAATTGGGGGAAAATGAAGAGAAATGGTTCATTTTTTTACTTTTCTTCTCTAAAACAGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGCA # Right flank : GCACTTATTGTTTAGCAGACCCTTGCAAATCGAGTAGAGGGAAAAGCTAGATAACTTTTCTCCCCTCTCACACCACCAGTATATACGGTTCCGTATACGGCGGTTTCATTTGGGATCAGTTTAAGCACTCTTGGGTCTTTGATCTTCTGACTCAATGTGCGCATTAATCTGTCGTGATGTACTTTATCGAAGAACTTCTCTAAATCCATATCGATAACCCAACGATAGCCATCTTTTATATAGCTTCTCGCTTTCCTGACCGCGTCATGTCCTCGTCTATTCGGGCGGAAACTATAACTGTGTTCAGAGAATGTTGGGTCATAGATGGTTGTTAGAACTTGTGCGATTGCTTGTTGGAGGAATCGGTCTAACACGGTAGGAATTCCTAGCTTCCTCATTCCGCCGTTTGGTTTCGGGATTTCGACACGACGAACGAGTTGAGGATAGTAGGTACCTCCTTCGAGTTGTCCTCGAATGGAAGCCCAGTGTTCCATGATATG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28024-27196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHZB010000039.1 Virgibacillus pantothenticus strain 179-C4.1 HS NODE_39_length_41240_cov_222.669776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28023 32 100.0 33 ................................ ATGCAGAATCCTTTGAATACATGTTTAACGCCA 27958 32 100.0 36 ................................ TAACTCATTTTTAACCAATGTACGCAACCTATCCAA 27890 32 100.0 33 ................................ CTCACAATTAGTTTATTATATGTTAGCTAATAT 27825 32 100.0 35 ................................ ACTCACGATCCAACCACGTTAATTAGTAGCGTTGT 27758 32 100.0 34 ................................ ATTGTTTTGAGCGTAGCGAAAAACTAGTTCTTTC 27692 32 100.0 34 ................................ CTACTAATAATCTTTTCAATACCATCTTTACTTG 27626 32 100.0 35 ................................ TTATTTGGATCTTTTGCCGTTGTCCACAACAACCC 27559 32 100.0 34 ................................ TCGTGTTCCAATATAAAGGATTTCTGTTGTCGTC 27493 32 100.0 35 ................................ TACGGGAGTAGATGAGTTTACCTATGCCCCATTAG 27426 32 100.0 32 ................................ CGTTTGTAAAACGAGGGGAAACGGAAGGCGCT 27362 32 81.2 36 ....TCG.ACC..................... TTGTCAATTTAGGTATTGCTATGGCTCCGTTAGGGG 27294 32 100.0 35 ................................ ATTTGAGCGACATATTCTGCGTAGGCTCGTTCGTC 27227 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CGAACAAGGAAAAAACGAACCATCTATTGAAACTATCAGAACACTAGCAAAGCTGTTCGACGTCTCCACAGATTATTTACTAGGTCTGATTGATCAACCCAAACACCCCATAAATTTTACTATAAAAGATGATTTCACATTAACGGAGTCAGAATTGCAAACCGTCAAACAAATGAAAGAGCAACAACTACTAAGTGAATTAAGTGAGAATCCTGTTGAAAATGTGGAAAAACTGACGAAGCTTTGGAAATTTATTAATGAGTTGTAGGGATCGGTGCGAGGTTACAGAGTTTAAAACTAACTATTTGGTTAAAATTATTTGATTGTTTTGGTGCGAACCTGAAGTGCACATAAAAACACAGGGGGATTCGCACCATTATTTCATTGTTTTTTGTTAATATTTGGAATAAAATATATGGTATTAACATTGGTTTATAATATTTTTCTTTTTAATGGGTCATTTTTTAATGTTTTTTGTAAACTTTTAGGAAAAAATCGCT # Right flank : GCGTCAACATTAATTTCACTCATATCGTTAACAATAATGGCTATTTTTAACCCTTTCTGATTTTCAAGAAGATGATTGAGCAGAGATGTTTTACCTGCTCCCAAAAAACCACTTAAAACGGTTACTGGTATTTTTTTACTCATTGATCTTCCCTCCTCTATCATGATCCATATATGCCCGACTAGGTGTAGCGCCTTCTTGAAATAAATACTTTCCACTATACCCTTCTGTAGCTTGATCAACTTGCACTATTACCAGTTGGCAAACTCGCATACCAACCTTCAATTGAACAGGGACTCGATTTGCATTAAATAATTCCAAAGTGATCTGCCCAGAGAAGCCCGGATCGATCCATCCAGTATTTTGAATAAAGACACCAAATCTGCCGATAGAACTTCTCCCTTCAACAAAGGCTGTTAAATCGTTTGGTAAACGAATTTGCTCTAATGTTGTTCCTAACATAAACGTGTTAGGCGGAATCGTGACGACTTTCTCATCTG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 131648-131287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHZB010000003.1 Virgibacillus pantothenticus strain 179-C4.1 HS NODE_3_length_228808_cov_238.681814, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 131647 32 100.0 34 ................................ ACTGGTATCAATACAACACGAACTATCGAGTCAG 131581 32 100.0 33 ................................ AAAAGAATACGTGGGATTGCCAAAAGGAATGTT 131516 32 100.0 35 ................................ CATGCAAGGTGAGCCTGATGCTTTTTCGGACGAGG 131449 32 100.0 33 ................................ TACGCCTGTCGTCACATGCTTCTCTTGGTTCAG 131384 32 100.0 34 ................................ CACTTAAAGCTAATGAGTGTTTTCCATCAAATTG 131318 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTTTATGGAAGTAGGCGAAAAAAATGTTAGTACTAGTTACATATGATGTCAACACATCAAGTAATGGTGGCCGAAAGCGGTTACGTAAAGTGTCGAAAGTATGTCAAAATTATGGGCAGAGAGTGCAGAATTCAGTTTTTGAATGTATTGTAGACGATGCACAGTTCGCTGCTTTAAAAATTCAGCTAACAGGATTAATAGATGAGGAAAAGGATAGCTTACGCTTTTACCGATTAGGAAATAACTACAAAACAAAAGTAGAACATATTGGTACAAAGGAAGCAATTAACTTAGAGGATCCCTTAATTTTTTAGTGCGAACCCCAAGTGCACATGAATTTCCCGGGGGATTCGCACCTTTTAAATGGAATAATATAGGTGGTTTTTTAGGAGGGCTTGCTAATTCAAATTTAAAATGACTTTATTTTTGCCCATAGATTTCGCAAAAATCCATAAAATAGGAGTTTATGAGCAAAAATCGCA # Right flank : TTCAGATTTTGTAACCATAAATCAGGCTAGGAGAATGGTTAGCCTGATTTACATTTGATATTTTTTCTAATGCCTTTATATTTTCTGATTGGCATACTTCCAACCCCTAGGAATAAGGCCATTTTTCTTTTAGCATGTCCATAAATATTGCTACATTTTGTTTACTTTTCATAATAGGTGAGTAAACGCAGGAAAACATTCGTTTGAAATGGATGTCCTTGAGCTGTAATGTGGTGAGCTGCTCTAATTGCACATCTCGTTCTATAACACTATGAGACAATAATGACAGTCCCATTCCCTTAATCACGCTTTCTTTTACTCCCTGATTGCTACTGATCGTGAGAAATGATTTAACTTGTAATCCGTTGGAACGAATCACATGCTCTAAATATTCTCGGGTCCCAGACCCCTCCTCACGGGAAATCCATGATTGATTTTGCAAATCTGAAGTGGTTATCTCTTCTTTTTGAGATAGTTCATGGGAAACAGGTGCAACTACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34612-35243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHZB010000043.1 Virgibacillus pantothenticus strain 179-C4.1 HS NODE_43_length_35410_cov_215.170209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 34612 32 100.0 36 ................................ TATTTTTTCAACTTTATTATCATACGAACCATTAAC 34680 32 100.0 36 ................................ TAGGAAATGATGGCATGTCTGGTAAAAAATTGTGAT 34748 32 100.0 34 ................................ CGTTAGAATAGCATCCATTTTTGATGCGCGTAAA 34814 32 100.0 34 ................................ CCAGTAAGGTAACTATAAGAAATTTATCTACTGG 34880 32 100.0 34 ................................ GGTTTTTATATTTACAACTATTAAGACATGAGTA 34946 32 100.0 34 ................................ TCTCATGCGCAGTTGTACTTGATAGTCTAATTCG 35012 32 100.0 35 ................................ AATCTTTTCGCGTGGAGCTGTTTCATCGAAAACAA 35079 32 100.0 35 ................................ CGTTGGCTGCTAAAGTTCTTACGAATGTTAATGAT 35146 32 100.0 34 ................................ CCGGTTCTGCCTAAATTACCTAGCATAGATCGAA 35212 32 96.9 0 .................C.............. | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.7 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : GCCCTTTTCCTGTAAGAGCTGGTTATCATCAAGGAATCTTTGAATATACAAAACCATTTCATTAAGCGTTTCTACAAAAATAAAGACAGCATCATGATTTTTGGAAAGCGTGGTCTGTTGCTCAGTAAAAATGTCATAATCTGTTGGTTGGTTAATGATAGCCATATTTGTATATTTTTGCAGGTTTAATTTATCTATGATGGACAATTGGTTACACTCCTTTTTATACCTTGTTTCTTATAGGTGTGATTTAATAAACCACTTATTTTAACTTTATGTTATTATTTACAGAAAGACAAACCTTTATTTTTCATATTAAATTAAAACGTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCAAAATTTCTTTGTATTTTTCAATAATTTGACATAAAATAGAAGTTATAATCGTATTTTTAGAATAATAAACGGAATAAGGCATATAAAAAATAGTTTTTCTGTAAATATTTAGGTGTAAATCACT # Right flank : GATTCCTGCCTACCGGCGAGGGAGCCCCCTCAAAGTCGCACCCTGTATAGGTGCTTTTTCGCTGACATCGCACCTTATATATAAGCGCCGCAATCGAGTAGAGGGAAAAGCTAAATAACTTTTCGCCCCTCTCACACCACCGTACGTACGGTTCCGTATACGGCGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25563-25199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHZB010000013.1 Virgibacillus pantothenticus strain 179-C4.1 HS NODE_13_length_147036_cov_221.170490, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 25562 32 100.0 35 ................................ TTTATACCTAGATAAAAAATCATATGATAAAATAC 25495 32 100.0 34 ................................ GCACCAAACACCGCCAAGTCAACGTCCAGATGAT 25429 32 100.0 34 ................................ AGCGTTAGATCAGTTTAATTCTGATTATGGGTCC 25363 32 100.0 34 ................................ ATAGTCGATATTTTCGAATTCCCTTGCTATGTTT 25297 32 100.0 35 ................................ CTTTTGAACATCAACAATAGGCAGGTAACCATTGC 25230 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CTGGTTCATTGCTAGTATCCTCCTATAAATATCTTCTTTTTCTAACAACTTCAGTTTACACGGTATTAATCGACAAATTAATACCGCTTTTTTCATTCCATGATGAAAATAACCGTATTAATTCACTGTTTTATTTTAGGTTATATAATGTTGCTTGGAAGAAATCATTTGCTGTAAAAGCTAAATGTTTTACCATTGAATGAAAGTTAAATCGTTTTCAAATATATCACCGAGATCTTAATAAAATTCTATTACACCTTAAATGACTAATTATGAATTATGCCTTATAATGAATACAGAATTATTAATGCCATTTCAGTTGATTTTTTTGGTGCGAACCCCAAGCGCACATAAAAACCCCGGGGGATTCGCACCAAAATTCACTTGTTTTTGTGGTAATATATGTAATATAATTCAACACAATTAGCATTATTTACGATTTCCAAGCTAAAAATATGCTGTTTTTTGATTGTTTTTGTTATTTTTAGGAAGAAATCGCA # Right flank : GCCGTATTTTTAAACTTTTTATAGTCCGTTTTAGTCGCACCTTATATAGATACAACAAGCTCAGAAAAAATGAAATCGCTCGCACACACCCTATTGCTACCAAATCTCTAAAAGACATGAACCAAATAACCTAACGGAGGCGCGTATGTTTATTTATATCCTTATATCTTTAAGTATCATTATCCTAACCGTCATAATTAGCGTTCTTTGGCTAATTTCATGGTCAAAAAAGCCTGATGCAGATTACGTTTTAAAATTTATAGCTAAAAATCCGCAAAGATCTTCCTTAATAATTATAAAGAACGGAAAATCGCTCGCAAACGTTAACGCGAATGAACGAAAACCATTAGCTAGCACGGTAAAAATCATGATTGCCATTGAATTTTCCCAACAAGCGGCTAATGGTAGCATAAACCCAGACGAAAAAGTTCATCTTGATGATCTCGCTCGTTTTTACGTATCTCACACTGATGGAGGCGCGCATGAAAAATGGTTAATAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 33261-33029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHZB010000013.1 Virgibacillus pantothenticus strain 179-C4.1 HS NODE_13_length_147036_cov_221.170490, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 33260 32 100.0 34 ................................ TGCTAATTGCCTTTGATTGGCTGTACTTGCAAGA 33194 32 100.0 35 ................................ TATTGCTGGTTTTGATGTTGTTTATACTATTAAAA 33127 32 100.0 35 ................................ GTCTGGTGCGTGTATTCTTGCACCAACGTATAGTC 33060 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TTATTTATGTGTAAAGGCACCTCAATCCCTCCCACTAGTCATCATTATATCTCAGTTAAAAAGGCTTAGACAGACATACTTTTTCCATTATAAAGTGGAAGAGTGTTATTGAAAGATGATGCTTAAACCGTTGTTTGCTAACTTAATTATCACGTTTTTATTTAGATTTTCTCCAATGTTTAGCGCTCATTGACAATTGAATCTAACTTCATTGCAACTAGTTTGGACAAATAATAATTTTATTCCTTTTGTTGATTTCATCATAGTTAAGTGATCTTTATTTTAAACTATCGTATAATAGAGATACAAAATTAACATGAGCTTATTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTCAACTATTTTTATGGGAATTTATGGAGTTAAAACAACGACTATTTAAGCATTATTATTGATTTTCTCTTTAAAACAACCACTTTTATACGACTTTTGTAAATTTTTAGGGAGAAATCGCT # Right flank : TCATCAATATCGGTTGCTTGTACAGTTATCTTTTTGTTGGATAGGTTACACTTGACTAGACAAAAAAATTAAGGTGAAGTAGACTAGACGGAATATAATAATGGTTCATGATAAAAAAGGAAATTAATCATACAAAGTGTCTTTACCCGGAGAAGCAGGCATGGTACCCTGCTTCAAATACTATTTCTTCTATTTAACATCCAAACTTTTTAACTCACCACATAGTATGGACAAAAAGGATAAGGCTAGAAGCGGATATCGTCTAAAGACGGAGGAATTAGACCACTCGTTTGTAAGTTAAATCAATCAATTTTTAGTTCACATTACATCACAATCTATATCGTAATTATTATAAACATTAATTTAAAATGGTTAACAGCAAGTAAATTCTTGATCTTTTTATTAATCATAATCATGTAATATTGACCGTTAACCCCGCTTTTGCACGCTTCAATCATTTTGCTATAGTTCACGCAATATAGCCGTTTTCCATAGCAAGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 39727-39032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHZB010000013.1 Virgibacillus pantothenticus strain 179-C4.1 HS NODE_13_length_147036_cov_221.170490, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 39726 32 100.0 35 ................................ GCGTAATAATCGTGGATATTTCTCTGTAGGTATTT 39659 32 100.0 34 ................................ TCTTTTTTTATACGGAAATATTACCTATACAATA 39593 32 100.0 36 ................................ TTTTTGTTTACTTATTTTAACATCAGCGTGTACGTT 39525 32 100.0 34 ................................ AATATCTATGCAAGCCAAAATTAATACAATACTT 39459 32 100.0 35 ................................ TCGATCGGGAGGTCAACGTGCCATCCTCTAGCCTT 39392 32 100.0 33 ................................ TTCGAGGAGACAGTAAGCGATATGCTGAAACAA 39327 32 100.0 35 ................................ GGCAACGAGATGCTTTAATTGCCCTGTTTCTGGGT 39260 32 100.0 34 ................................ CAGACCCGCCCGTCTGGTCAAATCTAAATCTTAT 39194 32 100.0 33 ................................ TATTGCTGGTTTTGATGTTGTTTATACTATTAA 39129 32 100.0 34 ................................ AGTAACGTGGACTATGGCAAAGCTGTTGTAAAAG 39063 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ATACAATTATATTGAAAATAAAGGATACACCATTGACAAGAGGTACGGTGAATTAATACCAATTCTTCCTAATGAAGAGCTAAAAAAAATCCTGCAATTGCAGGATAATCAACCATTGCTATTTTTAAAAGCCTTTACAGTGTTTGAAGATGGGAAGCCCTTTGAGTATTCTAAAGTATATTACCACCCGAAAAAATACTCCTTTAAATTCATCTCAGAAAAGAACCATTAACTAGGTAGTGATTCTTTTGTTGATTTTATCATAGTTAAGTGATCTTTATTTTAAACTGTCGTATAATAGAGGTGCATAATTAAAATTAGCTTATTTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTTAACCACTTTATGGGAATTTATGGAATTAAAATAACGATTATTTAAGCATTATTATTGATTTTCTCTTTAAAATAAGCATTTTTATACGACTTTTGTAAATTTTTAGGAAGAAATCGCA # Right flank : TTTAGCAGCAGAGTTTCGAAGGCTAAGTATAGGTGTGTGATTGGAAGAAAAAGAATCAACTGCTTTATCAAATAGTGGTAACACGGAAATAATCTAACCATGCCAATAAAGTGAATCTTCAATCAGTGGAGGTTTACATTCGTTCCCCCACTGATTGTTAGTATGGTATGACCTAAAGGCCTCTGCACAAATCGAGTATTTAGGTGCTGCTGTTATCTCCCACAGATTATCCAACTCCTGAAGTGGGAGTTAAAGCACCTTATGTACAGGATAAAAACAGAACTCTGTAAAACACTCAAAACATTAAGCGTTTAACATGTGATTCACCGAAAACTTTAATTTTTCTAACCCATCATATAATTTCTCTTTTGGACAACCTATATTCATTCTTAGAAATTTTTCAGTTTCTCCGTATACTTCACCAGACATAATACCTACCTTCCCTACATGAACCAAATAATCTTGAATCTTCTTATTACTTGCGTTTAGTTTGCTAGCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 146793-146093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHZB010000013.1 Virgibacillus pantothenticus strain 179-C4.1 HS NODE_13_length_147036_cov_221.170490, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 146792 32 100.0 34 ................................ CATTCTTGAAGTGCGATCACCAGTTTCAAAGATC C [146779] 146725 32 100.0 35 ................................ TTCCTTTGCATCAGATACGTATATCTCGCATTGTT C [146711] 146657 32 100.0 35 ................................ ACTTAAAAAGTTTGCTATGTTCCAACTGTCATAAC C [146643] 146589 32 100.0 34 ................................ AAAGAAGAACAGGAAAAAGAAACAGGAAACTATA C [146575] 146522 32 100.0 35 ................................ GCGTAGGCTGTATGAAAATATGGTGTTCGTCCATC C [146508] 146454 32 100.0 35 ................................ CGCTCCTTCGATTAAGGCTTTGTCGCTTATGCGCT 146387 32 100.0 33 ................................ CTGCCATTCTTTTTTTATTTTGTCTCTTGCTTC 146322 32 100.0 35 ................................ ATCAAATGACTGGCACAAAAAACGTATTGCTTGGT 146255 32 100.0 34 ................................ CGTGTTGGACTGTATACTTGTTGCTTGGTCAATT 146189 32 96.9 33 ...................T............ CATCACATCGTTATAACCAACTTCGTAATTCCC 146124 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.7 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGTTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATATTATTTTTGGCAAATATTGGAAAAACGAAGAGAAAACGTTCATTTTTTTAACTTTCCCTCTCTAAAACTGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGC # Right flank : GTCGCACTTATCGTTTAGTAAATCCTTGCAAATAAAATACAGCACCTCATTTTAAAAAGAGGCGCTGTTAAACTGAAACAGGTATTCAGTTAAATTTCGTAAAATCACCCGCTAGAAAATATCTGGGGAAACGTCAAAATCTAAAACACAATATAGCCTAATATATTTGTACTTATCCTTACTATTATTCACTAGCTAACTCCCCCATACTCCTTACCTGAAATCCGGTTTAAATTCTCCAGTAACTGTTTGATGCCCATTGTTGCGCTCGTACTGTTCTACCCTTTCTAGTTCAAAGCGATCCATGATAGGAATGTCATTAACTGAAAATAGGTAGGAATCCTCTGCTGGTACATGCTCATACCATGCCCAATTTGGCACAACAAAATAGTCGCCTGCTTTCCAATCGAATCGCACACCATTTATAATGGTATAACCCGATCCTTTGTAAGCATGATAAATAGTAGAATGGGTATGACGCAGTGATTTTGTATTAAACT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 164494-163667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHZB010000006.1 Virgibacillus pantothenticus strain 179-C4.1 HS NODE_6_length_208033_cov_201.951365, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 164493 36 100.0 30 .................................... GAGGAAAGTTCTTCTTCAAGTATTTCCTCG 164427 36 100.0 30 .................................... AAGCTGACCCTGCGCGTTAGCGCAGAAGCT 164361 36 100.0 30 .................................... TCGAAGCCTATCAACTCTAAGGCTTCGTCA 164295 36 100.0 30 .................................... CGCGGTATCGCTATTTAAATAATCATTCTG 164229 36 100.0 30 .................................... GAGATCTTAGCGAAAGTATGTCGCAAAGTA 164163 36 100.0 30 .................................... CGAAAATGCTGACAAAAAAGAGACGGACAA 164097 36 100.0 30 .................................... TTGGTCATAACATTATTATCTTTTGCTTTA 164031 36 100.0 30 .................................... TGACGCGGACATGCCCACGCTATATTTCTA 163965 36 100.0 30 .................................... TACCACTTCGCAAACAAAAAAAGACTTTTA 163899 36 100.0 30 .................................... TGGTTTAACGAATGAGGTTCCGATTGATGC 163833 36 100.0 29 .................................... TTGATCTCTAAAGCTAACTACCTTTTCAC 163768 36 100.0 30 .................................... ACTTTCGCTTCATCTCTATCGATATAGTTA 163702 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 ATCATATCACATCAGGATTCATAGGGGAATTATGGC # Left flank : TGAACTTACTAATTTAAATAGACATCGCTATGAGTAGATTTATGAGAATAATTGTCTTTTTTGATCTGCCGGTTGTTCTTAAAAAGGAAAGAAAAGCATATTCGCAGTTTCGAAAATTCTTATTAAATGATGGATATGTTATGTTGCAGTATTCAGTTTATTCTAGAATTTGCAATGGTGAAGATGGAGTAAGAAAGCATATGAAAAGATTGCGTGAAAATCTTCCTCCAGTAAATGGTGCGATCCGTGCTATGAAAATTACCGAGAAACAATTTGAAAATATGGAGATTTTATTAGGTACAACAGTTGTAGAAGAAGAATTAGGAGCAAAAAAAATAGATTTCTTTTAAAAAAGTGCTTGCAAATTAATTTGCAAGCACTTTTCAGCCTTTATTTCATAAAAATTTAATGAAAAAAAGATAAATATGTGAATAAATAGGATTGTTTTTAAAAATACAAAACCCTTGAAACGGGAAGCATCAAGGGTTTTAGAGCCATGT # Right flank : TGGTTTCCTTAACAATCTTTTGCTGTTTCATCATATCACATTAGAAATAAAACATCTTTAGTAAATAATAAAAGGTTGACAAAAACTAAATTGTCTGTTTGGTATATTAATGTGTATAATTTTAATAGTATTCAAGAAGTGACCTCTTTACCAGGGCAACATACATTTATGATAGAGTTCCACTTTTTTTCGCTAGGATTTTGAAGAAATATCCCCGAGAACTATTTTATACATACTAATAAAAGTTAAAAGTACTGTAATCAAATTATTAAATGGATACCAGCAATGCCAGAAAATAAACATGTTAAACAGCCAAAAAATATTGAATCTAAGTCAATCAATGAAATTTCAAAACGAACAGCTTTTAATCAAGTAACTATTAGGAGGTTTAGGATTCAAATATAATCTGAAATAGTGTTTATTATGCTATACTACTTGTAACAAAAGAGAGCTCAGCATATACATACAATAAAGGGTGTGAAGTTCATATGCGGGAACGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAGGATTCATAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //