Array 1 36943-38650 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSOO01000026.1 Pseudomonas aeruginosa strain HB159 IPC1190_26.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36943 28 100.0 32 ............................ TCCAGTTGCGGGGCTCGGTAGAGCTTGTCCTG 37003 28 100.0 32 ............................ GAGTAGTCGCCGGTGTTCGACGCTGCCGAGTA 37063 28 100.0 32 ............................ TCACCATCATGCTTGTACGTGCCGCCGATCTC 37123 28 100.0 32 ............................ GGCTACCAATCGGCAGCGTCGAACACCGGCGA 37183 28 100.0 32 ............................ CTCTTCGCGGATCTTGGCCAGGAACGGGTCAA 37243 28 100.0 32 ............................ AAAACGCAGAGACCCGATGGCGTAATCTTCCG 37303 28 100.0 32 ............................ TGGCTGGAGCGGAGCGTCGGCGATAGCGCGCA 37363 28 100.0 32 ............................ AGTCTGCGCCAATGGAGAGGCCTTCCAGCCAT 37423 28 100.0 32 ............................ AGCACGCTGTGCTGAGCCACGACCTTTTCGTC 37483 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 37543 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 37603 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 37663 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 37723 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 37783 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 37843 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 37903 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 37963 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 38023 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 38083 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 38143 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 38203 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 38263 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 38323 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 38383 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 38443 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 38503 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 38563 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38623 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 29 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49845-47175 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSOO01000026.1 Pseudomonas aeruginosa strain HB159 IPC1190_26.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49844 28 100.0 33 ............................ TGGGGACCGCCCAGCCGAAGCCGGCTGCTCCGG 49783 28 100.0 32 ............................ GAGGGCGATCTCGACTTCTCGTCGATGATCAG 49723 28 100.0 32 ............................ TGTCCGCAGCAGGCCCTAGGGGATAACTGCGG 49663 28 100.0 33 ............................ ATCTTGATCTCCAGGTAGAAAGGGAAGGCGCTT 49602 28 100.0 32 ............................ TCGATGCCCCTCTTGCGAAGGGCATCTGAGAA 49542 28 100.0 32 ............................ GCAAGGCATGCAGCCGGGCACGAAGCTCTACG 49482 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 49422 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 49362 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 49302 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 49242 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 49182 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 49122 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 49062 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 49002 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 48942 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 48882 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 48822 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 48762 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 48702 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 48642 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 48582 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 48522 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 48462 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 48402 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 48342 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 48282 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 48222 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 48162 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 48102 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 48042 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 47982 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 47922 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 47862 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 47802 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47742 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 47682 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 47622 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 47562 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 47502 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 47442 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 47382 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 47322 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 47262 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 47202 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //