Array 1 960523-959910 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXKS01000001.1 Listeria monocytogenes strain PNUSAL000149 DYZ54_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 960522 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 960456 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 960393 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 960329 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 960264 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 960200 29 100.0 36 ............................. CAACTTGAAACCTAGTCTGATAACATAATCAACAAT 960135 29 100.0 36 ............................. ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT 960070 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 960004 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [959980] 959938 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 94.8 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACTGGGGATCGACAGAAAGTTGTAAATGTTTGGGGGAAGGGGAATTTGGCGGTTTTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : GAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTACAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATTAGCGAGATAGAAATTT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6695-4809 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXKS01000003.1 Listeria monocytogenes strain PNUSAL000149 DYZ54_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6694 36 100.0 30 .................................... TTATCATACATTAGCCACTATCAGAACAGT 6628 36 100.0 30 .................................... TTTATTTAGTATTGTGTTGCAACACAAAGC 6562 36 100.0 30 .................................... TGTGGCGGTTGGGTCTTGGTGTCGGTTTTA 6496 36 100.0 30 .................................... TTAAGTCGACCACTTTTTCCCGCTCTGTGA 6430 36 100.0 30 .................................... GAAGATGAGAAGCGTTCCAAGTTACAAACA 6364 36 100.0 30 .................................... CAAACAAGCTAAGGCCCTGAATAGTATTGA 6298 36 100.0 30 .................................... TCAAGTATCAGCTACAACATATCTAAGTTT 6232 36 100.0 30 .................................... TAAGATATGCACTTGAAATGAATCTCCGCA 6166 36 100.0 30 .................................... AGAAGTTACGTAAAGAAATGATTGACTATG 6100 36 100.0 30 .................................... AATCAGTTAGGGGATATATTTATCATTCGA 6034 36 100.0 31 .................................... TATCTCCTTTCTTCAAAGCCACATAGCAGTA 5967 36 100.0 30 .................................... GGAAAAATTAGAATTAACTACATCTAAAAA 5901 36 100.0 30 .................................... ATTCCTGTAGTCATCAGTGTTCCAGTAGAT 5835 36 100.0 30 .................................... TCAATGCCTCGCAAGCTGCCGTAGTACGCT 5769 36 100.0 31 .................................... AGAGTCAGCAGAGTTACGGGTCTTACAATTG 5702 36 100.0 30 .................................... AAGCGTTACAAGTGTTACACAGAGCTATGA 5636 36 100.0 30 .................................... GTTCAATGTACCGCTTGAGGAAGTAACTAA 5570 36 100.0 30 .................................... CAATGGCAACTTAGGAGTTTTCAGCTACTA 5504 36 100.0 30 .................................... AAATTCATGTGCGAATAAATAGGTGCTTTC 5438 36 100.0 30 .................................... GAACAATTATAGATTGGTTCGGTTCAAGGA 5372 36 97.2 30 ................T................... ATAATGTTGCTAAAATTAATAAAACGGCTA 5306 36 100.0 30 .................................... TAAGAGAGTCAAGGCTTCCAAGTTTCGTGT 5240 36 100.0 30 .................................... TCTTTGGGATTTTTCTACAAATGTGTGTCC 5174 36 100.0 30 .................................... AACACTAGTCGAAGTAGAAGGCTTCCAATA 5108 36 100.0 30 .................................... TTTGGGTACGCATAGTATGCGAAAAACCTT 5042 36 100.0 30 .................................... TCAAGCCGCATTCAATCAAAGTATTCAAAC 4976 36 100.0 30 .................................... GAAAACTTTGTGGATCGTGCAGAAAAAATA 4910 36 100.0 30 .................................... CAAGAAGAGGGAAAGCTTAAGTATCCATTT 4844 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : TAATATTCTCCCCCCATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCCTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATTAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAATAAAATAAAACGAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGACTTCCAAATCCAAGAAACCTCACCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGCCCACAGAGAGTTTTTTCTTTTCTCAAAAAAATAAACTCAAATCCCTTGCCTTGGTGTGAACTCCAGGGTTTATAATTCTATATGTAAAGAACGAAACGAGGTGATGGAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //