Array 1 3747103-3748274 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI535616.1 Enterobacter roggenkampii MGH 34 addUh-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3747103 28 100.0 32 ............................ GACCGCATGTCGTAAAACAGTTTCAGTGTTTC 3747163 28 100.0 32 ............................ AAACGATAGCGTCACATGTTTTTTGCGTCAAC 3747223 28 100.0 32 ............................ TGGACGCGTCGAATATCAGAGAACGGCAGGAC 3747283 28 100.0 32 ............................ TGCAAAGCCGGGTTTTAACGAGCTATCAGTGT 3747343 28 100.0 34 ............................ AGTCCGCTCCCTGAAATGTTCGGCGCGTCGCTGT 3747405 28 100.0 32 ............................ ATAATATTTATTGATATACTCTTTTAATTCCA 3747465 28 100.0 32 ............................ AGAAAATAAGCGCTTTAACGCCCTTATAGCCC 3747525 28 100.0 32 ............................ TTTACGCGCTGATAAATCTCCACCTGACGACC 3747585 28 100.0 32 ............................ TGCAGGGATTGCCTTCAGTGTCGCCAGCGCAA 3747645 28 100.0 33 ............................ ATCAGCAATGGATGGGAACGCATCGAAGCAATC 3747706 28 100.0 32 ............................ CCTCTCGCGTTCGTGAGAAGTTCGAACATGAT 3747766 28 100.0 32 ............................ TTGTGCCAGTTACGGAAAGCGGAGCAGAACAG 3747826 28 100.0 32 ............................ ACCAGCAGGCAGGCATCACCGGCGTGCCAAAA 3747886 28 100.0 32 ............................ GCAGCCAATACCAGCGGTAAAACGCTGCTCGG 3747946 28 100.0 32 ............................ TCTGCCGCGTCTGTTTTCCTCGCCTCACGCGG 3748006 28 100.0 32 ............................ GTCGGCGGCAGCATAGCTGACAGTAGTTTCCG 3748066 28 96.4 32 A........................... TAATTATGGCGCTATTACGCTGAGTCATAACG 3748126 28 100.0 33 ............................ CGCGCGGACGGCTCCACGGTAAAACACGTATCA 3748187 28 100.0 32 ............................ GGGTGATTACATCTGCGGTGAATGCTGCGTTG 3748247 28 92.9 0 ............G..........T.... | ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGGTGGAATTTGAGGACGAAGCGGAAAAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACTGCGATATGTTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAATTCATATTATTTCCTGAGTGCTATCTGAGGCGTCGGGGGTGTTCCTCTGACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAACCTTTTGATTTATATAATGCGAATTTACGAACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTTTAACAATAAGATGGCGCAGTTTCCTTTCA # Right flank : AGCCCCTCTGGGCTTTAATGCCGTGGAAATGGCGTTACTGTCCCACAGACAGTACAAGTAAACCCATCCCTCACAAACATTCACCTCGTCTATTTAAAAACAAAATACCATCATCCACACGCTTTCCCTTTTCAGATTAAATAAAAATCCCATTCAGGGGATAATTATATTTTCGTGGATATATTATTAGTGAAAATAATCCTTTTAAAAAAGGATGTATTTTTTGTTTAGTCATCACCGAAATTTCCATTCATTTGATATCTATCAAATTTGCATTTGTCTTATGTCCGATAACATACCCGCATTCAACACCTTGAAATTAAAGCCGTTGCCATGCCTGCAAATAGCATCACTCCTACCGATTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3757828-3758276 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI535616.1 Enterobacter roggenkampii MGH 34 addUh-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3757828 28 100.0 32 ............................ GCTAATTGGCTCCTTGGCGGGCGGCAGGGTAT 3757888 28 100.0 32 ............................ CGTCAGCTTTCCGGCGGAGAGCTGCGCCGTCT 3757948 28 100.0 32 ............................ GTGTTCTTGAAGTTGATGAAAATGGCGCAGTT 3758008 28 100.0 32 ............................ CAGCGGTTTTCGCATAATAACCGCAGGGTCGA 3758068 28 96.4 33 ....A....................... GCATGAATCGCACTTCCAATGTGCGCCGATTTA 3758129 28 92.9 32 ....A.................G..... AGTATCCACCGGCGACTTTACTGACGGCATCG 3758189 28 85.7 31 ....A......C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [3758214] 3758249 28 67.9 0 ....A...T..A....AT...CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.9 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AAACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTAACCTCCTGAGTGATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGGGTGGGTGGAATGGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCGACTGCGACACACAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAAC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //