Array 1 16319-15516 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLZ010000002.1 Neisseria subflava isolate Neisseria_subflava_BgEED23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================= ================== 16318 36 97.2 30 .................C.................. AATAGTATCCTGATAGTATCCGTGTAGTTA 16252 36 100.0 30 .................................... TGAAAAGGATTAAGGGAAATGGAAACTCAT 16186 36 100.0 30 .................................... AAGAAAACGGCGTTAAGCGCAAGAGGGGAA 16120 36 100.0 30 .................................... CCTTCAGGTAGGCGAAAGCCGACAGCAAGA 16054 36 97.2 30 .........................G.......... TATCTTTCATATCTTGCTTTCATGGCCTCA 15988 36 100.0 30 .................................... CGGAGTTAGAAGCTCTCTTTGATTCATTTT 15922 36 100.0 30 .................................... AATGATAGAGTCGCAAAGAAACCGACAAGA 15856 36 100.0 30 .................................... AAGCCCAGTGAGCAACTTATAGCCCATAAA 15790 36 100.0 30 .................................... TTATTCAAAAGGTTTAGTCAATTATTTTGG 15724 36 100.0 30 .................................... TCTGACAGGAACACTTGATGGTGTTGAAGC 15658 36 100.0 71 .................................... CAAAGAAGCGATGTATTCATGGTCTTTCGCAGTGCTACAATCCTGAAAACACGAAATAACGACAAAAAAAC 15551 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================= ================== 12 36 99.5 34 GTTGTAGCTCCCTTTCTTATTTCGCAGTGCTACAAT # Left flank : AAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGCGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCGAAAGCAAAAGAATTGCGCCGCGTAGTTGAACCCTTGATTACTTTGGGTAAAAAACCATCTTTGGCAAACCGTCGTTTGGCTTTTAACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGTGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTGATATGAAAGCACTACCTGTTTAGGTAGTGCTTTTTTCATTTAGGAAGTCTCTATTTTATTTTGCAACGCTACAATTTTATTGTTTCATTCAATGGGGTGAATATA # Right flank : ACTCCAACGGGAAATCCTTATTCTATAAGGGTTTTCCGTTTTATTTTGACTAAAAAAGTGGCTTTAAAATAATAATAGTTGGTCTGAATTGACCCTTTTTTCTTGGGTTTTTAGCTCTCCCAACAGCAGTTTCATGGTGGCAAATTGCTTTTCCGTTACTTCCAAACAGCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCATCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTGGCCGCTGTGGTAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATAGCAAGATTTCAGGCAATTTCAGCTGTTTGGCGTTTTTGGCGGTTACGCTGGCTTGAAGTGAAGAAATCATTTTGTCGATAGCGGCCAAGGTG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTTATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 86734-87430 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLZ010000049.1 Neisseria subflava isolate Neisseria_subflava_BgEED23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 86734 33 97.0 33 T................................ AAAAAACCGTCCGCTATATCTTGATGGCATTCC 86800 33 97.0 33 C................................ GCCTAATCCTGATGGAAAGCCTGATAAAAAGCC 86866 33 100.0 33 ................................. ATCGTGCCAGTTTCGCCATATCGGCCTGTAACC 86932 33 97.0 33 G................................ CTTTTGACCAAGCCCCGTAAGCAACTTGTAGCC 86998 33 97.0 33 C................................ AAATGTGATTGTCGATATCCAGCCTGTGAATTA 87064 33 97.0 36 C................................ TTCCTACCCGATAATGGTGTTTGCCCTGCTCCACGA 87133 33 100.0 33 ................................. CATCTCGGCTTTGGCTGACGGCGGCGCTGAAAA 87199 33 100.0 34 ................................. ATCTACTTCAGGAATGCCGTCAAGATATAACGGA 87266 33 93.9 33 C......A......................... CATTGTTAATCTTCCTTTTCTTTGTCATCGTCC 87332 33 93.9 33 .T...............A............... AATTCAACAGTTTTGTCATTAGCGGTTGAACCC 87398 33 93.9 0 T............A................... | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 97.0 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTATGATATTTCGCTGGAAGACGCGGAAGGACCGGCAAGGCTGCGGCGCGTGGCAAAGTTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCAGTGTTCGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGATAAACTTTTGAAAACCTACAACCCTGAAGCCGACAGCCTGCGCTTTTACCATTTAGGTAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCAGCGGTGGATGTGTTCAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATGGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGTGTTCGCGCTTTTCTTGGGAGCCTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CAAAGTAAGGCATTTAGTGGCACAAGGTCGTCTAAACCAGCCGGCTAGGTGTTGAAACTCTGCCACCGTATCTTATGTTTGAGTAGGGAAGAGGGGCTGTATGTTCAAATATCGTCCAAGCAGGCCACTCTTCTTTTGATCCTTCACTTTCCGAGGCTTTAGTGAAAGCAGTGGAGGATATTAGAAGCAAATTATAAAGGTTAATCAATAACAATGTCGTCTGAAAAAGATTCAGACGGCATTTTTTCTATTTACATGTTAAATTTAATATCATATTATCATTGCATGATATCAGTCTGAATTTTTTAGAATTTCAATATGAAACCTCTAATTTACTACGCCCATTCCGCCCAAGACGAACTCGGCAATCTCTTGCCTTACGAACATTGGCAAACCTTGCAAAGCCATTTGGTAAATGTTGGGGAAATAGCGGCGGAGTTTGCTCGGGTATTTGGTGCGCAGGAAGTTGCCTGCCAGCCCTTCAGCCGATCATGCCACTG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //