Array 1 5451-6881 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVM01000032.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU382b NODE_32_length_57665_cov_15.9424, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5451 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 5512 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 5573 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 5634 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 5695 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 5756 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 5817 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 5878 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 5939 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 6000 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 6061 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 6122 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 6183 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 6244 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 6305 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 6366 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 6427 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 6488 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 6549 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 6610 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 6671 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 6732 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 6793 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6854 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23644-25808 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVM01000032.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU382b NODE_32_length_57665_cov_15.9424, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23644 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 23705 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 23766 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 23827 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 23888 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 23949 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 24010 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 24071 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 24132 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 24193 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 24254 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 24315 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 24376 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 24437 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 24498 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 24559 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 24620 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 24681 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 24742 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 24803 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 24864 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 24925 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 24986 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 25047 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 25108 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 25169 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 25230 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 25291 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 25352 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 25413 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 25474 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 25535 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 25596 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 25657 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 25718 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 25779 29 96.6 0 ............T................ | A [25806] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //