Array 1 10973-12466 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOS01000003.1 Thermus thermophilus ATCC 33923 contig3_scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 10973 36 97.2 37 ..............C..................... TGGCTCAAGGGGCAGTTTCCCACGTGGTGCGATGTCC 11046 36 97.2 38 ..............C..................... GGCATGGACCCCACCCTCCTCCTCAACATGCCCATCCC 11120 36 97.2 36 ..............C..................... GGAGTATTCCCCCGGCTCCCCGTAGGCGTGAGCCAA 11192 36 97.2 37 ..............C..................... TAGGCCCAAGCGTAAACGCCGGACCACCGCCCAAGGG 11265 36 97.2 39 ..............C..................... ATCGGGCAACTTCTGGGGGGCAGGGAGCCCACTACGCAA 11340 36 97.2 37 ..............C..................... ATGCTGTACGTAATGCCGTGCGCGTCAATTGCGCTGG 11413 36 97.2 37 ..............C..................... CCGGACGAAGGGGACCCCTCCTCCGGGGCCTCCTGGG 11486 36 100.0 37 .................................... ATGGACGCCGGGTTCTGGAAGAGCATTTTGTAGCCTC 11559 36 100.0 36 .................................... GTACTTCAGCGTCCCGCTCGTCCCCGGCGTCGCCAG 11631 36 100.0 36 .................................... GCCAACGCCCCTGAGGACTACAGGGATCTCCACGGG 11703 36 100.0 39 .................................... ATGAGGGGAAGCCACCCCCCGGACTCAGCCCGCCGGACC 11778 36 100.0 38 .................................... CGCTTCTCCGGGGTCATGACCTGCGGCTCCCCCTGGGC 11852 36 100.0 33 .................................... ATCAGCGCGGCCACGAGGCTCCTGGAGCTTGAG 11921 36 100.0 38 .................................... ACTGGACACCTTACGGCGTGAGCGCTTATGCCGCTGAA 11995 36 100.0 35 .................................... CCATACGCCTCCACCGCGTACGCCTGGTCTAGGGA 12066 36 100.0 36 .................................... GTTCTGGGCGAGGAAGTTGACGAACCCCCGCCCGTC 12138 36 100.0 36 .................................... GTAAAGGCGCACCCCTCCTGGTTCACGCCGCTGGAT 12210 36 100.0 38 .................................... ATCTCCACCGAACGGGCATAGGCCGCCCCCCGGAGGAG 12284 36 100.0 36 .................................... GTAAAGGCGCACCCCTCCTGGTTCACGCCGCTGGAT 12356 36 100.0 38 .................................... ATCTCCACCGAACGGGCATAGGCCGCCCCCCGGAGGAG 12430 36 94.4 0 ................................GC.. | C [12464] ========== ====== ====== ====== ==================================== ======================================= ================== 21 36 98.8 37 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GCTTACAACCCAAAGGAAGAGGCCGCCTTGCGGGAGCTTTTTGAGCTGGACCTCGAGGTGGCAGGCTTCCGCAACCTGCGCTTCCACCGGGTACAGGCGGGGAAGGGCTTTTTCCCCGGTTTCACGGGTGAGGCGACCCTGAGGCTTTGGAGCCAGAGCCTCGAGGCCCAGGAGGCCCTGGGGCGCCTCCACGCCCTAGCCTTCTTCAGCGGCGTGGGGGCCAAGACCCCCTACGGCATGGGCCTGGCAGTCCCCCTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGCTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGATCAGGGGGCAAGATACATGTACCCGGTCGTCAAACCGGAGGCGTGAAAGCGGGCCTGTATTACGAGGAGTTATCGTTCGCAATACTCATAAAATCCGACCGGAATACTTGACTTTTACCTCCCCCCTGGCTAGCCTGGCCTCCAGGAGGTGCGCCCGTGTTCGTGACGATGAACCGCATCCCCGTGCGGCCCGAGTACGCCGAGCAGTTTGAGGAGGCCTTCCGGCAGAGGGCCCGGCTCGTGGACCGGATGCCGGGGTTTATCCGCAACCTGGTCCTGAGGCCCAAGAACCCGGGGGACCCCTACGTCGTCATGACCCTCTGGGAGAGCGAGGAGGCCTTCCGGGCCTGGACGGAAAGCCCCGCCTTCAAGGAGGGGCACGCCCGGAGCGGCACCCTGCCCAAGGAGGCCTTCCTGGGGCCGAACAGGCTGGAGG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : GTTGCAAACCTCGTCAGCCTCGTAGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 27036-26778 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOS01000035.1 Thermus thermophilus ATCC 33923 contig36_scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 27035 37 100.0 38 ..................................... TATGGGTGGTTCTATTGGGTGGTTAGGGGCAACTGGGT 26960 37 100.0 34 ..................................... AGGTCCTCGGCCTGGACCTACAGGCGGAGAGCGC 26889 37 100.0 38 ..................................... CACCAGGTGCTCCAGCTCATTAAGAGCCAGGCGGCCAG 26814 37 97.3 0 ...A................................. | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 99.3 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : CTACGATATAGGGGGG # Right flank : CCCCAACGCCTGGCCCGGCTCAGGTACCGGGACCGGACGGGGGAGTAGCCCCAGGAGAGCAAGCCAAGCGGCGTTGCCGCCTACGCGGCCCCTCAGCGGATCTGCACCCGGTAGCACACCTCCCCCGCCTCCCCCGGGCCCACGTTGCCCACCTCCACCCTCACCACCCCGCCCGAGACCTCCCCGGCGTCGTCCCCCTGGGAGGCGGTGAGGTAGAGGGTGGCGCTCCCGTGGCTCCAGCGGATGGCCTTTCCCCCGTAATCCGGCACGGAGGGGAGAGGATCCGTGAAGAAAGGCACCGGGTCGGTGAGGACGAACTGGCTCACGGAGGCCGTGCCCAGGTTGCGGTAGGCCACGCAGTACTCCAGCACCTCCCCGGGCCTCCCCTCCCCCAGGGTGCCGAACCCTGTGCCCTGGCTGACGTTCCGCACCCTCTTCTCCAGCCGGACCTCGCCCCCCGAGACCGTGGTGGTGTCGGCGAGGCTTCGGAGGTCCACCAC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 1 20170-18971 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOS01000050.1 Thermus thermophilus ATCC 33923 contig52_scaffold39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 20169 36 97.2 35 ..........T......................... CGGATCCTGGACGACCACCCTCGAGGCCAAGGGAC 20098 36 97.2 35 ..........T......................... CTGCACAGTGTTGTCGTCACTGTAGCTCTTATTGG 20027 36 97.2 38 ..........T......................... CTGGCTGGCCGCCTCCCCCATGCGGGCGTCCACGGCGG 19953 36 97.2 35 ..........T......................... TACGAGGGCTCCTCGTGGGACGCGGACGCCGCCGT 19882 36 97.2 39 ..........T......................... GCTGAGTAGCGTCTTGCAGTCCCGCCGTGGCCTGCTCCC 19807 36 100.0 36 .................................... TGGCCGGAGGAGTTGCGGGCCAATAAGCTGGCCCGC 19735 36 100.0 36 .................................... ATTGTATTCCCCTACGCATATGGGTTGGGCGCTTAG 19663 36 100.0 36 .................................... TAGCAACCTCAAGGGGGAAGCCCTTGGGGAATGGCT 19591 36 100.0 37 .................................... CCGCTCAGGGGGCATCCCCTCCGCCACCCAGCCGCGG 19518 36 100.0 38 .................................... AGGGCCTGGGCCTGGCGGGCTCGGGCGGCGGCCTCCAA 19444 36 100.0 37 .................................... CTGGCCCGGCGGGACGGTCTCGGTGAGGAAGAAGCAG 19371 36 100.0 37 .................................... TTGGGCCTCGCGGCCTTGGAGCTTCCCGGCCTAGGGG 19298 36 100.0 36 .................................... CGGGGGATGGTCGTCCTCTCGGGCTACCCCTCTGAG 19226 36 100.0 37 .................................... TTGGGCCTCGCGGCCTTGGAGCTTCCCGGCCTCGGGG 19153 36 100.0 38 .................................... AGGGCCTGGGCCTGGCGGGCTCGGGCGGCGGCCTCCAA 19079 36 100.0 37 .................................... CTGGCCCGGCGGGACGGTCTCGGTGAGGAAGAAGATG 19006 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ======================================= ================== 17 36 99.0 37 GTTGCAAACCCCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GTTAGCCTCGTAGAGGATTGAAACATGGAGAGCTTGGTAACGGTAAGGGGCGCTCCTT # Right flank : TGTCTTGCCTGTTAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCCCCCATGTAGAGCTTTCGCCGCAGGAGGGGGGGTCCTTTCCTGGAGAGCCGACTCCTCTCCACGCTCTTTCCGACGCTTCCCGCTCCGGGATCAGCCCCGCGTAGGAGGCTGCCGCCTTCGCCCGGCCCCAGAGGTGGGGCGGCAGGAGGGCCAGCACCGCTGCCGCCGCCAGGTAACCCCATCACGGGGTCCAGAAGCGGAGGGCGGGGAAGGCCCCCAGGTCCCGGTAGTTCAGCGTCCAAACGGGCGCCCCAAGCCGCAGGGCGAGGAGGGCCACGCCCGCGTCCTCCAGGGTGCCCCCCCATCCGGGCAGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCCCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 6837-6571 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOS01000051.1 Thermus thermophilus ATCC 33923 contig53_scaffold40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 6836 36 100.0 41 .................................... TAGAGGAGGAGGCTCGGGTCGTTCGCCTCCACGATGCGCAA 6759 36 100.0 42 .................................... ATCTCCGCCCAGATGCGGATGTACCCGTCGTGGGAGAGGGGG 6681 36 100.0 39 .................................... TCCACAGCGCTCACAAGAGCGCCGGGAACTTCAACATCG 6606 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================== ================== 4 36 98.6 41 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGACCCGGGCCCGCAAAAAGCGGCGCCGCTAAGGCTTCCGCAAGCCCCTGGGGGAGCTGACAGCGCTCCAGGCCCAGCGCCTGGAGGCTGCCCTCTTGGGAGGGGGGCGCTGCACCCCCTTTTACTTCTGGCGGTAGAGCGGGCCTTTGCTATACTTGTCAGCAAAATTACGATGCAACTGGCTTTCTTTGGGCTTTGAAAAACAAAGCTCAGTCTGGTAGCCCCTTCTTCGCCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCCTGTGGCTTTGCATCGGCATAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAAACCCCCCTCTGGCGGTGCCGTCCGGGACGGGGTTCTTTGGGGGGTACC # Right flank : TGTCTTGCCTGTCAAGCGACCCCTTTGTCGTGGGTGAAGGCTTGTACCCCTCGCGCTAGGAGGCTTTCACGCAGGCCCCGGCGCGCCTGCCCACCCACCTTCCGGGCCCTTTCCCAAAGGGGCGCTCCCAGAAAAGGGGCCCGGGCGGTTCGGCGCCCGGGCCTTCGCGTCGTTCCAAATCTGGGGCTCTTTAGAGGACCAGGGTGCCCGCCCCCACGGCGCTTAGGGTGGGGGCCTCGAGGTCCAGGCGGTGGGCCAGGACCTTCCCCTTCCTTTCCCGGAGGAGGGGGAGGAGGCTTGCCACCACCTCCACCCCGTCTATGCGGGTGGGGTTGGCCCCCAGGAAGGCGAGGGCGGCCTCCGGCTCCCCTTCCGCGAGCCTTTCCAGGAAGCCCAGGTCCCGCCTCCTCGCCTCCTCCGCCAGGGTGCGGGTGAGGGGGGTGTCCCCGAAGCGGGGCCCCACGTGGGAGAGGTCCACGGCGAGGACGAGAAGGCCCGGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 11529-11183 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOS01000056.1 Thermus thermophilus ATCC 33923 contig59_scaffold45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 11528 36 100.0 40 .................................... ACCTTGGCCTTGTGGGCGGTGGAGAAGGTGTAGTCCACCC 11452 36 100.0 41 .................................... CTGACCGCATCGATCAGGGCAGGGAGGTCTTCCGGGGCCAA 11375 36 100.0 40 .................................... TCCCTAAAGGCACGGACCGGATGCAGGCCCTCCGCCTGAG 11299 36 100.0 45 .................................... GTGGTGGCTCCTCCGCAGACGGGGCAACGGTTCATGTTCACACCT 11218 36 91.7 0 ..............................G..CT. | ========== ====== ====== ====== ==================================== ============================================= ================== 5 36 98.3 42 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : TTGAGCCCCGTAAGGGGATTGCGACACCTTGGCCTTGTGGGCGGTGGAGAAGGTGTAGTCCACC # Right flank : GGGCCTGGGCTTGTATCCTTTCCCTAGGAGGCGTCCATGCAAGCCCCGGTGTACCTGTGCCTTCTGGGCAACGACCCGGCCCCGGCCTACTTGGGCTTGAAGGTGGTGGAGCGGGAGGCGGGGAGGGTGGCGAAGGCCGTCTTCTACTCCTTCCCGGCGTGGAACGAGGAGTACGGGAAAAAGCGCCAGGCCTTCTTCCGCCTCCTTTCCGAAAAGGGCGTCCTCTACGAGGAAAGGCCCCTAGAAAAGGGACTGGAAGAAGCGGAGGCCCGGGAGGTCTGGGTGAACCTCACGGGAGGGGCCAAGTACTGGGCGGTCCGGTTCCTCGGGTACTGGCGGCGGCCCGGCGCCCGGGTCTTCCTCGTGGAGGGCCACCGCGCCCTCGAGGCGCCCAGGGCCCTTTTCCTCTGGCCCCGGGAGGAGGAGCGCTCCCTTGAGGCCGAGGCCCTCACCCTGGAGGAGTACGCCAGGCTCTATCTGGAGCCCCTGGGGGAGGCCTG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 161-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOS01000065.1 Thermus thermophilus ATCC 33923 contig68_scaffold52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 160 30 100.0 35 .............................. ACCTAACCCTTCCCCCGGGCGTTGGCTTCGAACTG 95 30 100.0 38 .............................. CTGAGGAGATAGCGCACCGTACCGAGCGCCGCCTGCCC 27 27 90.0 0 ...........................--- | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 96.7 37 CTTTTGACCGTACCTATGAGGGTTTGAAAC # Left flank : CCTACGAGGGCGAGGTCCTCCTCGTGGAGGGAGGCGCCTGGGGGGTGGTGCGGGTCTAGATGTACGTGGTCATGGTCTACGACGTGGCGGTGGAGCGGGTGGCGAAGGTGCTCCAGGTGGGGCGGCGCTACCTCACCTGGGTCCAGAACTCGGTGCTGGAGGGGGAGCTCTCCCCGGCCCAGTTCGCGCGGCTCAAGGCGGAGCTGGGAAGGGTCATTGAGCCCACCGATGCGGTGCGCTTTTACGTCCTGCCGGGCCCGAAGGCACTAAAGGTGGAGGTTTTGGGCGCCTCCAAGAACGAGCCGGGCCAGATCGTTTGACCGGGTCCAAGTTGGCGCCAACCCCCAATCCCCCTCAAAACCCCGGGGGGTTGACGCACACCCCCCGATCTGCTAACTTGACCTTAGGTGGCGGGGTTCTCCCCATCTCGGCCGCAGGGGTTCTTGAAAACGAAGATTAAAGCTTCATGAGAGCCTGGCGTGCAGGACGATGTTTTGGCT # Right flank : A # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 8828-8987 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOS01000065.1 Thermus thermophilus ATCC 33923 contig68_scaffold52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 8828 31 100.0 34 ............................... GGCTTTCGTTTCCGCCCTTCGGGCCTACTTAGAG 8893 31 100.0 36 ............................... CCGGTCGTCACCCCCCACCCACTTCGCCCACTCGGA 8960 28 90.3 0 ............................--- | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 96.8 36 CTTTTGACCGTACCTATGAGGGTTTGAAACG # Left flank : CCGGCGCCACTCCCTCAATCTGGACGTGGCCGAGGTGTTCAAGCCCGTCCTCGCCGACCGGCTGGTCTTCCGCCTCATCCGCAGGGGGCAGGTGAAGCCGGGCCACTTCCTCCGGGAAGGGGAAGGCGTCTTCCTCTCCGAGGCGGGAAGGAGGCTCGTGGTGGAGGAGTGGGAGAAAACCCTCCAGACCACCTATCAGCACCCCGCCCTCAAGCGGGCCGTCTCCTACAGGACCACTTTGCGCCTAGAGCTCTACAAGCTGGAAAAGCACTTGATCGGGGAGCAGCCCTACGTCCCCTACCGCCTGCGCTAACCTTTGACCGAGTCCAAGTTGGCGCCAACCCCCAATCCCCCCCAAAACCCCGGGGGGTTGACGCACACCCCCCGATCTGCTAACTTGGCCTTAGGTAGCGGGGTTCTCCCCACCTCGGCTGCAGGGGTTCTTGAAAACGAAGATTAAAGCTTCATGAGAGCCTGGCGTGCAGGACGATGTTTTGGCT # Right flank : | # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGACCGTACCTATGAGGGTTTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 6973-7988 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOS01000066.1 Thermus thermophilus ATCC 33923 contig69_scaffold53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================ ================== 6973 34 100.0 43 .................................. ACACACCACCCTCACGGCCTCACCCCCAGCCTTACGTTGATGT 7050 34 100.0 42 .................................. ACTGTCTAGCACTGCCTCAAGCCTAGCTTCCAGTAACGCTTC 7126 34 100.0 41 .................................. ACAACGCCACAGGGCCTGGAGGAGCGCCCGCCACTCCTCCT 7201 34 100.0 44 .................................. ACCTAAGAGGCCGGGGGGACCCCTACCGGGGGCTAGAGATTTCT 7279 34 100.0 44 .................................. ACCCCCCTGGAGAGAGGGGGGCCTTCGGCCCAGAGGGGAGGCGA 7357 34 100.0 43 .................................. ACATCATTCCGTGCTCCCTGAGGCTCCTTTCCAGAGCTTCATG 7434 34 100.0 42 .................................. ACAGCGGCGGCCACGATGCGTGCGGGGATGGGGGTGTCTCCG 7510 34 100.0 41 .................................. ACACCTCGCCTACCTCCGCCATGGAGCGCAGCTTGTTAAGG 7585 34 100.0 38 .................................. ACAATGTAAAGCACCCCCAAACCTCACCGATACATCCG 7657 34 100.0 38 .................................. CCTCTACCCGTACCGGTTTACCCACGCCACGAAGCCTC 7729 34 100.0 40 .................................. CCCCACGTGAACTCAATTTCCATGTTGGCGAGTTTTCCGG 7803 34 100.0 40 .................................. CTCCCAAAGCGTCAGCCACCTCTTCCGGGTCATCCCCGAA 7877 34 100.0 44 .................................. ACATATTCTTTTCAAAGTTTTCAAAACATACGCTGTTTTCTTTT 7955 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================================ ================== 14 34 100.0 42 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCG # Left flank : AGCGCTTGTTGGAGGGGGTGAGCCATCCCCTGGGGTTCCGCAAGCCCCTGGGGGAGACGATTGAGGTGCAGGCTCAGCGGCTGAAGGCGGCCCTTCTGGGGCGGGGGCGCTACACTCCCTTTTACCTATGGCGGTAGGGGCAACTCTTGCTATACTTATCCGCAACATTGCGATGCAACTGGCTTTCTTTGCGCTTTTTCAAACAAAGCTCACTTTGGGAGGCGTTTCTTCGCCGATATTTTAACCTGGTGCAACGTTGCGGTGTGTGCTATACTCTTGCCAACCCGGACCTCCGGGCGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATCGGTGTAAACCCTCAAAAACCCCCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTTTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : GCCTCGCGGGGGCCTTTGGCTAGCCTTTTCCCATGGGAAAGCGTCTCTATGCCGTGGCGTACGACATTCCGGACGACACTCGCCGGGTGAAGCTGGCCAACCTCCTGAAAAGCTACGGGGAGCGGGTCCAGCTCTCCGTGTTTGAGTGCTACCTGGACGAGCGGCTTCTGGAGGACCTGCGGCGGAGGGCCAGGCGGCTTTTGGACCTGGGCCAGGACGCCTTGCGCATCTACCCCGTGGCGGGCCAGGTGGAGGTTCTGGGCGTGGGGCCTTTGCCGGAGCTCCGGGAGGTCCAGGTGCTGTGAGGCCCCGCGTGCACACTTCACACGGGTCCTGGGGAGGCCCGTTTATACTCGGGCCATGCTTGGGGACGGCCTGAGCGTGGCCCTGGCGGGACTTTTGCACGACGTGGGCAAGCTCTATTCCCGCGCCCGCTGGGGCGAGCGGGACGATCGGGTTCCCGACCGCACCCACACCGCCTACACTGCCCACTTCGTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 64-397 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOS01000077.1 Thermus thermophilus ATCC 33923 contig81_scaffold62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 64 37 100.0 38 ..................................... CCCTCAGGGTCCGTTACTTCCACAAAAGTTTTAAAGTG 139 37 100.0 39 ..................................... GCACAGCTTTCGGACGGTGGCTGGCGAAACCCCCAACTC 215 37 97.3 39 ....................................T ATGCCCAAGAGGTTGAGCACGCTGCACCTCCTTGCCGAT 291 37 97.3 33 ............T........................ CCGCCCGGTCCCTGGAGCACCAGCCTGTCCCAC 361 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 98.9 38 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : GCCCGAAAGGGCCGGTGAGGATTGAAACCGGGAGGAGGCGCTGGAGGTGCGGAGCTACGAGGCG # Right flank : CAAACTTGCCATCCTGGTCATGCGTAGTCCCCACGCGTGTGGGGATGGGCCGGTGCTAGAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGCCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTCTCGGCCCGCACCGCCACCTCTCCCCCGTCCAGGGCTTCCACCTTTCCCTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTGATCCAGGAGCCCGGCATGGAGCGGGGGGCGAGCTGGCCGTTTCGCAGGTAGGCCCTTTCGGGGAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCCTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTTTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGATGA # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.20,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //