Array 1 468751-467159 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046377.1 Pectobacterium polaris strain PZ1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 468750 28 96.4 32 ...........T................ GCGCGATCCCGACCTCCGATATTTTGTTCTAC 468690 28 96.4 32 ...........T................ GTAAGGCCGCACCGTGAGATACACCGCCACGG 468630 28 96.4 32 ...........T................ ATTGGCTGTCACGCCCTCAGGCGAAACAGCCA 468570 28 96.4 33 ...........T................ GGTGGATTAGCTGTCGGTGATATCGAGTTTGAT 468509 28 96.4 32 ...........T................ TGGCCCACGCGGCGCATCATGCAGAAAGAAAA 468449 28 96.4 32 ...........T................ TCCTTCTCGAAAAATGCCAGCATCCTTTCTAC 468389 28 96.4 32 ...........T................ AGTGGAAATTCTTTTTCAATAGGCTCTAGCAT 468329 28 96.4 32 ...........T................ AGACGCCGCCAGCGGCATTCTGAGGCGATCAT 468269 28 96.4 32 ...........T................ GACGCCCCGCAATTGCCGCCAGTTGGTCAAGC 468209 28 96.4 32 ...........T................ AGCTATGAATATGTGATGCAAGGTGTTGGCCT 468149 28 96.4 32 ...........T................ ATTGGGATCGGCACGTCATACGCGTCGATTTC 468089 28 100.0 33 ............................ CGCCGGGGAGTTATCTATGTTTGTTTGCCCTCA 468028 28 100.0 32 ............................ CTTAAGCCATTTGTACGTGTACGGTGCAACGC 467968 28 100.0 32 ............................ CTTAAGCCATTTGTACGTGTACGGTGCAACGC 467908 28 100.0 32 ............................ CGCAATAATATCTAGCGCATCCTCGAGCGTTG 467848 28 100.0 32 ............................ AACATCGCCGAGCGTGTCTATTGAGCAGTTCG 467788 28 100.0 32 ............................ GCATCGCTGGAGGCGGGGCAGGACGTAACGCT 467728 28 100.0 32 ............................ CTGGAGCTGCGGAATTGACTGGATTTTGCGTT 467668 28 100.0 34 ............................ ACCGCCAGACTATCCCCGATTCAACACAGAGCAG 467606 28 96.4 32 A........................... ATTGACGAGATCCAGTTCGCCGCCGACTACAT 467546 28 100.0 32 ............................ ATCATCCGGGCATCTTCTGACGACGTGAAAAA 467486 28 100.0 32 ............................ CGGGAATGTGGCTTTCAATTGGCGGAATAACT 467426 28 100.0 32 ............................ AGCAGTAGCATCGATTGTTGACGTCTGTTTGA 467366 28 100.0 32 ............................ AATCGCAGAACTGAACCTAACGAAGCCTCAGC 467306 28 100.0 32 ............................ AGATTCGGCGCGTTTCGCCATTTCCCGTAACT 467246 28 100.0 32 ............................ GAATGACGCTAATGCCGCCCGCTGCATTCAGC 467186 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================== ================== 27 28 98.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTACCGGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGATTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATCGATAATAGCTGTGACGCCAGCGAAATAAAGCGCAGGCTAACTATTTGATAAGAAGAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCCAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGTTTAAAAATCAATGAGTTACGAAAGGGCGGAAAAAAAGGGTTTTTGCGGCGAAAACGGCAATTGCTGCAAATAAAACAAACCGTTAGAGTGATCGGGCAACG # Right flank : ATAAAACGTGCTGAAAATCAGCAATAAAAAACTCATAGGCAACGTGGCTTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCTTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCACTGGAGCAGGCACAGATGATTCTTGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGACTGATCAACCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTACTCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 477716-479063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046377.1 Pectobacterium polaris strain PZ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 477716 28 96.4 32 A........................... AAAATGAGAACGCGCCGTTATCCAATGCGAAC 477776 28 96.4 32 A........................... GGCTCTGTGTGTTTGCCAAATGTGGCGTTGTT 477836 28 100.0 32 ............................ ACATGTGGTACGCAGAAATCAGCGCCTATTTG 477896 28 100.0 32 ............................ ATTCGTATGAATCTAGCCACAATCCGCATGAC 477956 28 92.9 32 A..........C................ ACTGGGTCAATATCAAAGACGCTCTCGCAGTA 478016 28 92.9 32 ...........C.....T.......... ACCCGAAAGCGGATGCACCGGCCTATGGCTGG 478076 28 92.9 32 A..........C................ TGTAACCAGCTTCGCTGGGCTTCCGGCGGGAT 478136 28 100.0 32 ............................ AAGAACGGCAAGCCCGCCCCAGCTTCCGGCTG 478196 28 96.4 32 ...........C................ GTAGTGCATCATGCGCATGATGCGGTCAAACC 478256 28 96.4 32 .................T.......... TAGCGCGAGAACACGAACCCATTGCACCATGT 478316 28 100.0 32 ............................ ACCGTGCGGCCATCTGACCAGTAATTGCCGTC 478376 28 92.9 32 ...........C.....T.......... GATCAGGGGATGTGATTCATGTGTCAGGGCGA 478436 28 85.7 32 ........T..C.C...T.......... CGACCGCTGGGAAGCTGCTGACACACCCGAGC 478496 28 100.0 32 ............................ GCAGCAACTCCCTGTCGTCATTTACAAAATCT 478556 28 96.4 32 .................T.......... TTACCTGCCGACTGTCTTTTACGCCAGTCAGC 478616 28 92.9 32 ............G....T.......... CAGCGCAGAACCACCCAGGCTAACCCGCGTAT 478676 28 92.9 32 ............G....T.......... GTTCTGGAACCATTCAACAACCTGCACCAAAT 478736 28 89.3 33 ............G....T......A... TATGGGAAACATGACAGAATGCTATCTGTCACA 478797 28 100.0 32 ............................ AGCAGCAAACACGCATTGGCCGTACCTGGACC 478857 28 92.9 32 T..........C................ GGTAAATCACGCCCCTGTCGTCGCAAGCGCCA 478917 28 89.3 32 .........T.C.C.............. AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 478977 28 89.3 32 ..........AC.C.............. TTTATCAAACGCGAAAATGCGGGATTCGGGAT 479037 27 82.1 0 ............GC.......-....TT | ========== ====== ====== ====== ============================ ================================= ================== 23 28 94.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCCACTCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGTTGGTTTCTGCGTGTACAGCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAACCCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGTTGACGGAAGCAGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGTCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGATAGTTAGTGTAAAAACTTAACG # Right flank : TCTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGATGTTCGCACAAGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATTGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACTGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAGCCCGACGTTTATCTGGCGCAGTGCGATAACCTGCGCCAGTATTTCGTCGGTCACCAAATGGAAACCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1073550-1072728 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046377.1 Pectobacterium polaris strain PZ1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1073549 29 100.0 32 ............................. TTTATATGTCATGTCATTGTATTTTGATTTGG 1073488 29 100.0 32 ............................. GCAATTGAAGAGATGGAGAAAAAATAATGGCA 1073427 29 100.0 32 ............................. CCAACACTCTATTTCAGTTGTCAAATCAGATC 1073366 29 100.0 32 ............................. CTGGTTCTGGGTCAGCCGCAGCAACGGATAGC 1073305 29 100.0 32 ............................. GCACGGGGTTAGCCATGCCTTGGTGATTGGTT 1073244 29 100.0 32 ............................. ATAATCGCCCACTGATTTTGCATTACCTGCCG 1073183 29 100.0 32 ............................. GGACAGTCGCATATTACCCTCCAAGCCAACGA 1073122 29 100.0 32 ............................. TCCGCAAATACTCACTCAATGCATCACGAGTA 1073061 29 100.0 32 ............................. AGGACTAAATAACATGAATACTTTGACTAATG 1073000 29 100.0 32 ............................. GGCAGATGGACAGAATGACCTGTATGTCTAAC 1072939 29 100.0 32 ............................. AGATTGGCATTAAACGCGGACTCCCCTTTTTC 1072878 29 100.0 32 ............................. CTCGGGATGAGAGCGCTTATGTCGTTCAGCTA 1072817 29 96.6 32 ................A............ AATGACTACCTTACTAAAACGGCAACAGCTAA 1072756 29 89.7 0 ............TT.............T. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGTATTACGCCACCGCTCCCGCCGGATGATGCCCAGCCACCGGCGATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGCCTGCGCGGCAGGCTGGCGGTGTGGTTATTGGAAATCCGCGCAGGCGTGTATGTCGGTGACACTTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCATGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTCCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTATTATAAAACAACTCTCTATCTTTAGA # Right flank : ATGTGAAATGTAAATTACACATATTTCCATATTGTCAACTTGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGATAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCGCCTCTCGTAAGGATTATGAGGATGCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //