Array 1 335026-336151 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNC01000060.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N19871 SEEH9871_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 335026 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 335087 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 335148 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 335209 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 335270 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 335331 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 335392 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 335453 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 335514 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 335575 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 335636 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 335697 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 335758 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 335819 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 335880 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 335941 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 336002 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 336063 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 336124 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 352407-354070 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNC01000060.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N19871 SEEH9871_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 352407 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 352468 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 352529 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 352590 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 352657 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 352718 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 352779 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 352840 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 352901 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 352962 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 353023 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 353084 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 353145 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 353206 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 353267 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 353328 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 353389 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 353450 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 353511 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 353572 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [353614] 353614 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 353675 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 353736 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 353797 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 353858 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 353919 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 353980 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 354041 29 96.6 0 A............................ | A [354067] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //