Array 1 133954-135112 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LDEJ01000004.1 Lacticaseibacillus paracasei strain Lc1542 lactocasei_1542_4, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    133954	    36	 100.0	    30	....................................	GCTCAATCAATCCAAGGCGTTCCAACCGCT	
    134020	    36	 100.0	    30	....................................	TGTAACGCTTCACATAATGACCCCGCGCAA	
    134086	    36	 100.0	    30	....................................	CTAAACGTTCGCGAACCTCATTCAAGCTAA	
    134152	    36	 100.0	    30	....................................	ATGGATGATGCATTTGATCGACAGTGGCCC	
    134218	    36	 100.0	    30	....................................	GTGTTAGACTTAGATGTGGATGTTGCCCCG	
    134284	    36	 100.0	    30	....................................	ATACCAAGGCGGTGGCATGGCGTATACTGA	
    134350	    36	 100.0	    30	....................................	AGAACTGGACGCCGAACGCTTGGACACGCC	
    134416	    36	 100.0	    30	....................................	CCCTTTCGCCGCCATCTTTGATCGCCCACG	
    134482	    36	 100.0	    30	....................................	GCTATCTGGCTTGAATTCCTTAATCGATTT	
    134548	    36	 100.0	    30	....................................	AAGCCGATGATATAAAGAAAGACGCCCCTT	
    134614	    36	 100.0	    30	....................................	GAGGCTTACCCCGTCTTTACCAGTTGGTCC	
    134680	    36	  97.2	    30	..............C.....................	TTGTTCATAGCAGCGTTGGCACGGGTATTT	
    134746	    36	 100.0	    30	....................................	ATGAAAGCCAGCGAAGGCACATTTTTTACT	
    134812	    36	 100.0	    30	....................................	CGTGTTATTGTAATTAGTCGCCAAGTCTTG	
    134878	    36	 100.0	    30	....................................	GCTGTCAAGTATCTCATGTCCTTCTAGAAA	
    134944	    36	 100.0	    30	....................................	AACGTTGACCGCTCTGTCTCACGAAACTGG	
    135010	    36	 100.0	    30	....................................	GACGATCTCGCACATGCTCAGTGATATGCG	
    135076	    36	  91.7	     0	..........................T..A....C.	|                             	T [135108]
==========	======	======	======	====================================	==============================	==================
        18	    36	  99.4	    30	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	                              	       

# Left flank :   AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGGATTTAATTCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGACTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAATGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCA
# Right flank :  CCATAATTCCGAGAAAATGAATTGGCGGATTTTAGAGTCAATCTCATGCTAGAAATAACCAATTCCGCAACTTTAACGTCTTCGGTCTGGTTAGCGTTCGCAATATTGATGGCTCTAGCAACTCAGGTAATTGCCGGTGCGGTTTTCGTGGACCGCTAACATCTTTATTATGCCGTCAGCCATGCTTCAAAGTTAGGGATGTCTTTAACGTACCTGCTGGTGTTGACTATGACATCTGCTACTCAATTAATATTGCCGATTTGCTGACTACACAACTGCCTCTGTAGTGGGAATATAGGCAGTGACGCCTGTAACAATATGATTTAACATTCAAGTTTCTTCAAGGGAAAACATATGCGAGTGCTCATGTCCTTCAAAATGTTTGATGACTGCGAACATCATCGATTATTGTGAAACAGCAGGCATACCTGTCTAAACTTTTTTCGATCAGTGCTTAATTAACGAAGTTCTTCTGTGTCAGTCGCAACCTGAGTTGAGAG

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.50,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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