Array 1 162887-160922 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIW01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162886 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162825 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162764 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162703 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162642 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162581 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162520 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162458 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162397 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162336 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162275 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162214 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162153 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162092 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162031 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161970 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161909 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161848 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161787 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161726 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161665 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161603 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161500 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161439 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161378 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161317 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161256 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161195 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161134 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161073 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161012 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160951 29 96.6 0 A............................ | A [160924] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180511-179018 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIW01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180510 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180449 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180388 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180327 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180266 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180205 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180144 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180083 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180022 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179961 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179900 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179839 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179778 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179717 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179656 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179595 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179533 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179472 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179411 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179350 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179289 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179228 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179167 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179106 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179045 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //