Array 1 997038-1000096 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029036.1 Salmonella enterica subsp. enterica serovar Senftenberg str. 361154004 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 997038 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 997099 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 997160 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 997221 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 997282 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 997343 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 997404 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 997465 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 997526 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 997587 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 997648 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 997709 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 997770 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 997831 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 997892 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 997953 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 998014 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 998075 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 998136 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 998197 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 998258 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 998319 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 998422 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 998483 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 998544 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 998605 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 998666 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 998727 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 998788 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 998849 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 998910 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 998971 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 999032 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 999093 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 999154 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 999215 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 999276 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 999337 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 999398 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 999459 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 999520 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 999581 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 999642 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 999703 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 999764 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 999825 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 999886 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 999947 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1000008 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1000069 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1016642-1019051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029036.1 Salmonella enterica subsp. enterica serovar Senftenberg str. 361154004 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1016642 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 1016703 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 1016764 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 1016825 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 1016886 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 1016947 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 1017008 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 1017069 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 1017130 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 1017191 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 1017252 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 1017313 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 1017374 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 1017435 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 1017496 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 1017557 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 1017618 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 1017679 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 1017740 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 1017801 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 1017862 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 1017923 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 1017984 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 1018045 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 1018106 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 1018167 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 1018229 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 1018290 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 1018351 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 1018412 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 1018473 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 1018534 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 1018595 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 1018656 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 1018717 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 1018778 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 1018839 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 1018900 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 1018961 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 1019022 29 100.0 0 ............................. | A [1019049] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //