Array 1 3708-2642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYV010000081.1 Pectobacterium carotovorum strain NY1767A NODE_81_length_3823_cov_17.5308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3707 29 100.0 32 ............................. CGTGAAGCCGATCTACAGGCGCGCGAAGCGAA 3646 29 100.0 32 ............................. CTGCATTTCACCCCGACGTTCAGGGCGTACTC 3585 29 100.0 32 ............................. TGTTCCTATTAGGGACAGTTAGGACATGGTAG 3524 29 100.0 32 ............................. CGCCATTTGTGATCGGTCATCCAAGCCTGACA 3463 29 100.0 32 ............................. GAAATACGCTTTACGGCGTCAAAAATTACGCG 3402 29 100.0 32 ............................. CGTTATTGGCATGGATGAACGAGACATCCGCC 3341 29 100.0 32 ............................. AAGTCGTTGGTTCAATCGCGCCGCTTTTGAAC 3280 29 100.0 32 ............................. GGAACAAAATACGATGTGAAGGTTGGTGAGGG 3219 29 100.0 32 ............................. CGCAGCGCTGGTGAAAAGAAAGATGCTGCTTG 3158 29 100.0 32 ............................. TAGCACAAGTGAATATCGACGCTCAGGGCTCA 3097 29 100.0 32 ............................. GCAGATAAATGAAGGCAAGGCAAAAACGGCGC 3036 29 100.0 32 ............................. TCGATTGTGACAGCGCTGGATAAGATGATCAT 2975 29 100.0 32 ............................. TCGAAATCAAATAAATCCAATAGCCGCTCGAC 2914 29 100.0 32 ............................. AGATCTGAACCATCAGATACATGTACGGTGAG 2853 29 100.0 32 ............................. CAAAGCAGGCCGCGCTGCTGGGTGAACCGCTG 2792 29 100.0 32 ............................. ACGCAATCAGCGACGTTAATACTGATCTAGCC 2731 29 100.0 32 ............................. CGATAGTGAGTTGGCGCGTGCCTTAGGTGTCA 2670 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAATTCTCTACTTTTAG # Right flank : TAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATATGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 483-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYV010000107.1 Pectobacterium carotovorum strain NY1767A NODE_108_length_598_cov_14.768, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 482 29 100.0 32 ............................. GCATCGATCCGGGATTTGAGCACACGCCCGGA 421 29 100.0 32 ............................. CTGGCCCGAAAAAGCTGACATACCGTGTCACA 360 29 100.0 32 ............................. GAACCCCATTCACTACCGTTGATTGGTTTTTG 299 29 100.0 32 ............................. GTACTCATTCACGAAACGAGCCTGCATGTCGT 238 29 100.0 32 ............................. GGGTTAATCTGTCAGTAGTCGCCAAATTCATC 177 29 100.0 32 ............................. AAAAACCCGTTAGCCGTGCATTTTCTGACGTA 116 29 100.0 33 ............................. CTGCGCAACGATGAGCGAAATATCGAACGGTGC 54 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTAATTTTAG # Right flank : GCGTTTTATTACACGTTTGCCGCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27-483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYV010000059.1 Pectobacterium carotovorum strain NY1767A NODE_59_length_16830_cov_15.6312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27 29 100.0 32 ............................. GGATAACGCACAGCGGCAAAACAACGCTGGAT 88 29 100.0 33 ............................. TGTTGCAGTGGTGGTCTTAGTCATTGTTATCGT 150 29 100.0 32 ............................. GGGGATGGACGGATCAGTGATTCAGATATCAA 211 29 96.6 32 .............C............... CGAATTCACTTTCAGTGGTGTATTGAACTGCT 272 29 96.6 32 .............C............... ATACGCCGCGGTGACACTGAGGCTCGGATTAT 333 29 96.6 32 .............C............... AGAAAACGCTATGTCTATCCGGCGTTCAGTAA 394 29 93.1 32 ..........T..C............... TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 455 29 93.1 0 ............A..............T. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : ATTACACGTTTGCCGCTGATGCGTCCG # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGGGTCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACCGTAACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGTGGGCAGTGGTGCTGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGTCCTGCTGAACTGTATGACACGGTCGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAAGGCTCCGCGCTGTTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGGAGTATTCCGCCTTCCAATGTGTTCCAACCGATT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54264-52194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYV010000021.1 Pectobacterium carotovorum strain NY1767A NODE_21_length_83993_cov_15.6471, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54263 28 100.0 32 ............................ CATTAGCCAAGAGTCGTATTTGGCACCAGATA 54203 28 100.0 32 ............................ TGACGTGATAGATGGCGGAGAAGAGGATAACG 54143 28 100.0 32 ............................ AGTCAGGAGAGATCGCCCCTCATCATTTCCGG 54083 28 100.0 32 ............................ CCGAACCCCGTCTGCCCAATCCGGGCAATGTA 54023 28 100.0 32 ............................ GTGCACACTGGCGAATGTAACAATGGTTACAT 53963 28 100.0 33 ............................ GGTTATCAGCGGCGATGAAGCGACAGCGACTCA 53902 28 100.0 32 ............................ TCGTTTTTGGTCGTGATGTTCGCGCCAGTGAT 53842 28 100.0 32 ............................ TTTGCCATGCCGAAGGGGTGATGAGAACACTA 53782 28 100.0 32 ............................ CCGGCAATCCGAAACCCGGTCATTACTATGCC 53722 28 100.0 32 ............................ GTATAGCGTGTCGCCCTCTATATCTTCCGGGT 53662 28 100.0 32 ............................ CATGAGCAAAGCGGCGTCCGTGCCGTGTACAA 53602 28 100.0 32 ............................ ACGGTGGCGGTGTCCTGATCGATAACGTCAAC 53542 28 100.0 32 ............................ AAGATTGCCGATCGCAGCCTGAACAGCACGCC 53482 28 100.0 32 ............................ TGAACAGCACGCCAGGCAGTATCGCGGCGCAC 53422 28 100.0 32 ............................ AACGCAGAGGTCTGGATATCAGACGCGGTTGA 53362 28 100.0 32 ............................ ATGCCCGCTGCTCGATATCGATGACGCAGCCC 53302 28 100.0 32 ............................ TGGAACGCCTCATCCGGGGTGGATGGGTATTC 53242 28 100.0 32 ............................ CGATTGCCCAAAATGCGGTGGCGACGGTCACG 53182 28 100.0 32 ............................ TTTGTTGCGGCAGAGGAACAGGAAATCGAGCG 53122 28 100.0 32 ............................ ACGCGTGATTATCTGTCTGAATGCTGGTTCGA 53062 28 100.0 32 ............................ ACCAAAATGCTGCCAGCTATTGAAAACTGGAA 53002 28 100.0 32 ............................ AACACGATGCCGGTGACTGTGCTGAACAAAGC 52942 28 100.0 32 ............................ ACTCTTGGCGTGGATGCTGAGGCGGTCAACGG 52882 28 100.0 33 ............................ ATCGTTGAGCATCTGGAGAGTTACTATTTTTGT 52821 28 100.0 32 ............................ TGATCGCCACGGCTGTTTTTACCGAGTGCCGT 52761 28 100.0 32 ............................ TCGGAATTGACTTGTTCGCATTTGCTTGACGA 52701 28 100.0 32 ............................ TACTTCAAGCTGCAATCATCGGCAAGAAAGTT 52641 28 100.0 32 ............................ TACATCCTGAACCTATTCACCCCTATCACACC 52581 28 100.0 32 ............................ GGCGCGGCCTGCGCCCGTATGGCTTTCGTGTC 52521 28 96.4 32 ...........G................ CACATACGGCGAGCATTTTTGACAATCACTTC 52461 28 96.4 32 ...........G................ GCATCTGTCATGACGCATTACACAGAGACATG 52401 28 92.9 32 ........T..G................ AATCCCCAGCCAGCCGCAGAACACAGAGGTTG 52341 28 96.4 32 ...........G................ TCTGGAATTACATCCTCTATCGCACATTCCTC 52281 28 89.3 32 ...........A.....T....A..... TTAGTAATGTTTATTGGTCAAAACTCGCTACG 52221 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGTGTGACGGAGGTGCCGGTCCCCAGCATTACCACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGTGTTATCCATAGTGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGATGGCTGCAGAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCATCCCCTTAAATAACGCATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACTGATCCTGCTTCATCGTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 63185-64653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYV010000021.1 Pectobacterium carotovorum strain NY1767A NODE_21_length_83993_cov_15.6471, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63185 28 100.0 32 ............................ TCAAAAAGCTGAGATTCACCGTCAGTTTTGAA 63245 28 100.0 32 ............................ ATTACTGAGGATAGGTAATGGCACAGCATTCA 63305 28 100.0 32 ............................ CAGCAGTCTGAGGCGTCACGCACAAGAGCCGC 63365 28 100.0 32 ............................ ACCGTCTAATAGCGAGGCAAGACCAATGCTAA 63425 28 100.0 33 ............................ CGCCTGTAAAAATGCATCTTTCAGGTTGTTAAT 63486 28 100.0 32 ............................ GTACTGCAGATCGATTCGTTATGTTCCGATGT 63546 28 100.0 32 ............................ GTACGGCCCGCGGTAGGTGCCGCAGGGACGAT 63606 28 100.0 32 ............................ TGGACGGCACGCTATACGATAATCGACATCGT 63666 28 100.0 32 ............................ TTGAGCAGCTGTACGGCGACGTTCCGCGCATC 63726 28 96.4 32 A........................... TCATCGTCATACTTATGGTCAGGCTTTTGTTG 63786 28 96.4 32 A........................... TCCGGCAACTCAGAAAGAGCGGGAGATCGCAC 63846 28 100.0 32 ............................ TCGATGCGCCGGGGCTTGACTCGCTGCCCATT 63906 28 100.0 32 ............................ GGAGCTTGATAGCCTCAAACTTGAACCAGGCC 63966 28 96.4 33 ...........T................ CCGATGCCGCGCCGGCGACAGACGATCCGCCGG 64027 28 96.4 32 ...........T................ AATAAAACCTTTTACGGTTGTTGGTTTAACGC 64087 28 96.4 32 ...........T................ TTCGACCGGCTGAACATCTTCGCTTCGAGCTT 64147 28 96.4 32 ...........T................ ACTGCGCTGGATGGGTGGGAACGCCGTTAATT 64207 28 96.4 32 ...........T................ TTGTTGTACTGCTCGCGAAAGAATCCCCATGA 64267 28 96.4 32 ...........T................ ATAGTGAACCCACTGTTATCAAAATGACAACA 64327 28 96.4 32 .................T.......... TCACTCTCTCAGTTACTTCGCCCTCTAAAAGC 64387 28 100.0 32 ............................ AAGGAAGTGGCAAAACAAGCTGTTGCTCATCA 64447 28 96.4 32 ...........T................ TGGTGTGGCATAAACCAGGTCACCGCAAAGAC 64507 28 100.0 32 ............................ TCGTTGCGGCGAACGTAGCGCAGTACGCGCTG 64567 28 96.4 32 .............C.............. CCGTTCCACCAGCCGCAAGCCAGCCTAGCAGT 64627 27 78.6 0 ...........T.C......-..C..GG | ========== ====== ====== ====== ============================ ================================= ================== 25 28 97.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGCATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAATCCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAACG # Right flank : GCTTATCGAAATGCGTCGCTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCATTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATATCGTCGCTACCTTCATACGTATGGCGGTAGTACGATTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGCGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGAAAGCCCCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGTCGCAGGAAGCGCGCAG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //