Array 1 1052362-1054523 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084984.1 Klebsiella pneumoniae strain KP-PA chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1052362 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 1052423 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 1052484 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 1052545 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 1052607 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 1052668 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 1052729 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 1052790 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 1052851 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 1052912 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 1052973 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 1053034 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 1053095 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 1053156 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 1053217 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 1053278 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 1053339 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 1053400 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 1053461 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1053522 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1053583 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1053644 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1053705 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 1053766 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1053827 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1053888 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1053949 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1054010 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1054071 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1054132 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1054193 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1054254 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1054315 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1054376 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1054437 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1054495 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 71103-72105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084985.1 Klebsiella pneumoniae strain KP-PA plasmid pPAPIvir, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71103 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 71164 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 71225 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 71286 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 71347 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 71408 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 71469 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 71530 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 71591 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 71652 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 71713 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 71774 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 71835 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 71895 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 71956 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 72017 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 72078 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATGGGTCTTCCCCGATCATGGTGGGAAGACTCAGAACGCCATATTCAGTTTTCCATAGTGGAACATCACTCCCAGCTTAAAGCGCTCCCGGTTCCTGTATCCTCTGGCTTTTATTCTCAGCAGTCTGATCTTGCTGTTCAGCGCCTCTGCATTACCATTCGAGACACGATGAT # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //