Array 1 3735-3165 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLGV01000145.1 Acinetobacter baumannii strain ABBL094 contig-2000056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3734 29 96.6 31 ............................T GAAAAACGTAACGCAGAACTACAAGCTGTTA 3674 29 96.6 31 ............................T TCCAATTCGCATAATGAGCACTGATGTTAAA 3614 29 100.0 31 ............................. AACGGTAAAGTCATTCCATTTGTACGTTTAT 3554 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 3494 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 3434 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 3374 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 3314 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 3253 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 3193 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GCGTAGCAGGATCAAACCAAATGGCAATATTTCCACGATTAATGAGAGCTCGGTTATATGAAGACCAATTGGTTGTGCGATAAATTTTAGGTGTCGACTTATTCATTTGAAAATTATATTGTGGAATAAGCCTTTAGAGATAGGTTTGTGCAACAAAGCCCCCTAGATCTGTCATGAGTTCATAAATTTCATTACACGATAAAAAAGTCATTTCACTTAACCTACATATCATTTTGAGGTATTTCTAACGAATCAAGAAACAAAATTCTAATGAAGAAACAGCGATACTATAAAAATAAAATTAGCTGCGATGGAAGGCTACTCTAAGTCGATATAAAAATTAAGCTTCTGTTGCGTACGAGAACCTTATTTTTAGTAATCTATTTTTGCATCACGCCAAAGCCATAATCATAAGACCAAGTAGGCACTTCATCTCTATTGTAAGGTGTTAAAGATATACGGCAGCCTTGCTCATTGGCAATTTGGTACTCTGCTTCGGA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACAAATTTTATAAATAACTGTTTTATATAATTTAATATTTATAAAAAAATCCCAGTGTACACCACAGTGTACAAATTATCTATTGCTAGGCTATTTTACTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCCCTCACGCGCCCGCGCATTTTCTTGATTATTGTCTGACGGTATAGCGGTTTGCTGTGTTTTTTCGCTCCCATCATTTAATTGAAGCGGAATAGAGTATTTAAAGCTGCCCCTCTATTTGGTGGCTCAGGGGTCCCGAAAATTTGGGAGATTGAACATGGTGACTTTGGGTAACTCAGTTATCTACTGACTATCTTTAAGCTACTCGCATTTTAGAGATGTCCACACTGTATGACTGTACGAAAGTTTCGTAGTTCATTACCCAACGGAAATTTTCGCATACC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 23088-23536 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLGV01000076.1 Acinetobacter baumannii strain ABBL094 contig-1000072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23088 27 85.7 32 TAA...-..................... TGCTCCTGACGAGCTAAGACGGCGCGGCCACT CC [23093] 23149 28 100.0 32 ............................ ATTGAAGAAATCAGGAAGAATGCTCCAGAGGG 23209 28 100.0 32 ............................ AAACTAAAAATACAAATCAGTTGTTTTGATAT 23269 28 100.0 32 ............................ TAGATTGTATGTAAATGATGCCAGTGCATCAA 23329 28 100.0 32 ............................ ATTGTGGTAAGCTGTTGCATTAAATTTTATAT 23389 28 100.0 32 ............................ TCATAGATAAATAGACAAAAGGGGCCGTTAAG 23449 28 100.0 32 ............................ ATTGGATGCCATTACCCAATCCACCAAAAGCA 23509 28 89.3 0 ..........A.G..............G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGTTTCAGTCTGGACAAGTGCCGGTATTTTTAATCAGTCTGAAAGCAGGAGGGGTCGGTCTGAATCTAACTGCCGCAGATACGGTCATTCACTATGATCCATGGTGGAACCCTGCTGCTGAAGATCAAGCTTCAGATCGTGCATGGCGGATTGGACAGGACAAGCCGGTATTTGTCTATAAGCTGATTACTAATAAAAGCATAGAAGAAAAAATTCTTGCCTTACAGCAAAATAAAGCAGAACTGGCACACTCTATTCTAAGTACAGATCATGAAGGCGAAGTGAAACTGACGGAAAATGACGTGATGAACTTGTTTGAGAAATTTTAGTTTGGTTTCAGATTACCCTAATCATCTGTAAGTATCTGAAAGTCTGGATGCAATTTTTTCCAATGTTCTCTTAATTTTTCTTTATGAACAGAAATCATAGGTAAGTCTAGTAATAGCACTGGCCATACTGACCGTGCTTTGTCCATGATCGCGTGAAGTTGTTTTTCAA # Right flank : GTATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGTAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAGAACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17256-7502 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLGV01000246.1 Acinetobacter baumannii strain ABBL094 contig-37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 17255 30 100.0 30 .............................. GCTTAAATCTGCCAATGTGGATTTAATGAC 17195 30 96.7 30 .............................C GAAAAATTTCACGCGCCAAAAAAATTGATG 17135 30 96.7 30 ............................A. AACGAGCTTGAACTATTCCAAACAAGTTGT 17075 30 93.3 30 ............................GT CTTCGGCCTTGAGTGGACTGGTGCTGTCGT 17015 30 93.3 30 ............................AT AAACACCCTGAGTACTAGCTTTCGTACCGA 16955 30 93.3 31 ............................AA TCTTAAACATCAGTATGGGAAATACATCAAT 16894 30 93.3 30 ............................GC ATTACGGCTGCTGTAGAAGCCTTAGAGACT 16834 30 96.7 30 .............................T TCGGCGGGAAAACATTAATTGATTGATCGA 16774 30 93.3 30 ............................GA ATTTAGAATCAGCTCCAGCTGTGTCATAAA 16714 30 96.7 30 .............................T TATATGGGTTTACCTTCCCATCTTCTAGGC 16654 30 100.0 30 .............................. ATGCGTCCTTTAAACAACAGCAATAACGTT 16594 30 96.7 30 .............................C AAAATTCAAGAAATTTCTGGAACAAGTTGA 16534 30 96.7 30 ............................G. ACAAAACATCTAGCGTCACAAAAAGTACTT 16474 30 96.7 30 .............................C TGACTCTGAAAACATCTTTGAGTTCAAAGA 16414 30 93.3 30 ............................AA GCTCAGATTTAACAAAATCTGAAATTTGAC 16354 30 93.3 30 ............................GC CAACGACTTTAAACTCTTTAGTATTGTCAT 16294 30 96.7 31 ............................A. TGACAGAGGTCGTTCTCGGTACAGTTAGGGA 16233 30 93.3 30 ............................AT ATGTACTATACATATAAGCCATATAATCAG 16173 30 93.3 30 ............................GA AAGAAGGAATCATCCAAGATGGTAACGGAT 16113 30 93.3 30 ............................AT TGAATGAGCCAGAAACGTAACCAGTGCCAC 16053 30 100.0 30 .............................. TCCACTCCAGACCAATCACAGTGTCCATGT 15993 30 96.7 30 .............................T CAGTAAAAATGAGGTACAAGCAATTTGTCA 15933 30 93.3 30 ............................AC CAAACGGATATGTGAGTGTTGTTCGTATTG 15873 30 93.3 30 ............................AT AGGTTTGACGAGTAAGCGGATGAATCATAT 15813 30 93.3 30 ............................AC GAACCGTTTTAAAGCCGTACAACACATCTA 15753 30 96.7 30 ............................C. TCACGGCAAGCGTGGATCTGTAAATGTTCA 15693 30 93.3 30 ............................AA AATGTCTGATCCAGCATCACGTGAATAAGA 15633 30 93.3 30 ............................AA ACAGAGTGTTATAGCCATGCTTAACACCTT 15573 30 96.7 30 ............................A. TCAGGCACTGGTAAATCAACAAGTCTTCGT 15513 30 93.3 30 ............................GA CTAATAGCAAGTTAGATACAACTAATTCTA 15453 30 96.7 30 .............................T GAAAACCACCACCAGTTCCTTTACCACCTT 15393 30 93.3 30 ............................GA TTTAAGCTGTCCATTATTAGCCAGCCAAAC 15333 30 96.7 30 ............................G. TTACTTTGCCAAACGGTACTGTTATTCCGC 15273 30 93.3 30 ............................AT GCGCGGCAACCATGCGGTCTATGACTTCCA 15213 30 100.0 30 .............................. ACTCACCTCTGCAACAGAAGTAGGTGTTGC 15153 30 93.3 30 ............................CC AAGAAGAAAGGTAAAACTTGGAAACACTTT 15093 30 93.3 30 ............................AT TCAAATAAATTTTCTGAGTTTGAGCCTTCA 15033 30 93.3 30 ............................GA GGAGTAAGACATGGCTGATAAGGCTTTAAT 14973 30 96.7 30 .............................T TACGCTGAACATTCTTGTTCTGACGCCAGA 14913 30 96.7 30 .............................T GTCGCGGGTCGCCCATGTTTTCAATGGCCT 14853 30 100.0 30 .............................. ATTTGTGAGCAAGATTGAACGTTTCGTATC 14793 30 96.7 30 .............................C AATAAAAGATGGGGCAACTAGTGCCCCGAT 14733 30 100.0 30 .............................. AACGTCAGATCTTTGCTGACATCGAGGGGC 14673 30 93.3 30 ............................AA GCAGCAAAGTTAATGCTGTATAAAGTATTT 14613 30 93.3 30 ............................GA ATTTATCGGCATACTTGGAAACTGGTATTT 14553 30 93.3 30 ............................CA ACAATTCAGGATCCTGTAACTAATGTCGTT 14493 30 96.7 30 ............................A. TACGTTACAACATCAAATTTGGTCAAGGTC 14433 30 93.3 30 ............................GT CAACACAACGAACATGGGTTGGTATGACAG 14373 30 100.0 30 .............................. TTGTTAGGGCTATTTCTGCTTTATCCGATA 14313 30 100.0 30 .............................. ATGGTGCTGCTCCTCCTAGCCCTACGGGCA 14253 30 93.3 30 ............................CC TGAGCTATTAGCTAAAGAAAGCAGCTTTAA 14193 30 96.7 30 .............................T CAAAACTGGTCTTGGCGGTGTCTTAGTGAA 14133 30 96.7 30 .............................T GCACTAAACGCTTAGTTACAGACCAACCTT 14073 30 96.7 30 .............................A AAAAGGCAAGCGCACTCGATGTACCAAAGC 14013 30 93.3 30 ............................GC CAAATTTTGGCTTTTCACATGTCTAAATGT 13953 30 93.3 30 ............................AA ATACATTATGACCCTGCAATAACTTTGCAG 13893 30 96.7 30 .............................C AAACAAAACCTAATGACCCTACAGCACCTA 13833 30 96.7 30 .............................T AGACATTTTTAAGCCAGTAACAATAACTGT 13773 30 93.3 30 ............................AA CGTTTTTTTAAACGTGACTCAAATCGTAAA 13713 30 93.3 30 ............................CA AGCACGAGGCCAATCTAGCATTCTTGCTAA 13653 30 96.7 30 ............................A. GCAACAGCAATACAAATTGCTATGCCTACA 13593 30 93.3 30 ............................GC TATGGACAGGTTCGTTTAAAAGTTAAATTC 13533 30 96.7 30 ............................A. TGAGGATTCACACCTAGAAACTGGGCAGCT 13473 30 100.0 30 .............................. CTGCTTGAACAACATGAATTGCCCATTCAG 13413 30 93.3 30 ............................AA AAATATTGATACGATGGATTAACAACAGAA 13353 30 96.7 30 ............................A. AAGCGTCATGAATATTTGGTTTGGCTTGAA 13293 30 100.0 30 .............................. ATCATTAGTGCCTCTTCGGAAATCAACTTT 13233 30 93.3 30 ............................AA AGAGTATGTATTAGAGGGCTATGCACTTAC 13173 30 100.0 30 .............................. AAAATAATTAAATGGTCTATCACCGTCTTC 13113 30 96.7 30 ............................A. TAGATGCAGCACACAGCAATCAGGGCGCTC 13053 30 96.7 30 ............................A. CGCGGAAGAGCATTCGGGTGAGTTGGATTA 12993 30 96.7 30 ............................A. GCAACAGCAATACAAATTGCTATGCCTACA 12933 30 93.3 30 ............................GC TATGGACAGGTTCGTTTAAAAGTTAAATTC 12873 30 96.7 30 ............................A. TGAGGATTCACACCTAGAAACTGGGCAGCT 12813 30 100.0 30 .............................. CTGCTTGAACAACATGAATTGCCCATTCAG 12753 30 93.3 30 ............................AA AAATATTGATACGATGGATTAACAACAGAA 12693 30 96.7 30 ............................A. AAGCGTCATGAATATTTGGTTTGGCTTGAA 12633 30 100.0 30 .............................. ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 12573 30 100.0 30 .............................. CTACAGATATAACTAATCAGTTAAATAACT 12513 30 96.7 30 .............................A TGACACGCTATCAAGTGACGGTGCAAATAA 12453 30 100.0 30 .............................. ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 12393 30 100.0 30 .............................. CTACAGATATAACTAATCAGTTAAATAACT 12333 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 12273 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 12213 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 12153 30 96.7 30 .............................T TCGGGGTGGTTTTATTTTGCCTAAATTAAT 12093 30 96.7 30 .............................T GTATTGTTGGGTTTCTAGTTACCAGAGCAG 12033 30 93.3 30 ............................GT CAACCAAAGAACCCCAAGCAAATCGAGCAA 11973 30 93.3 30 ............................AT TATCTAAGCGTCCCATTAGAAAACCTTTAT 11913 30 93.3 30 ............................AT GTAATCTTGGTATGGGAGGTGTAAAGCCAG 11853 30 100.0 30 .............................. TTGACCCATCTATTGATGCATCTGTAAATA 11793 30 100.0 30 .............................. ATGGTGCTGCTCCTCCTAGCCCTACGGGCA 11733 30 93.3 30 ............................CC TGAGCTATTAGCTAAAGAAAGCAGCTTTAA 11673 30 96.7 30 .............................T CAAAACTGGTCTTGGCGGTGTCTTAGTGAA 11613 30 96.7 30 .............................T GCACTAAACGCTTAGTTACAGACCAACCTT 11553 30 96.7 30 .............................A AAAAGGCAAGCGCACTCGATGTACCAAAGC 11493 30 93.3 30 ............................GC CAAATTTTGGCTTTTCACATGTCTAAATGT 11433 30 93.3 30 ............................AA ATACATTATGACCCTGCAATAACTTTGCAG 11373 30 96.7 30 .............................C AAACAAAACCTAATGACCCTACAGCACCTA 11313 30 96.7 30 .............................T AGACATTTTTAAGCCAGTAACAATAACTGT 11253 30 93.3 30 ............................AA CGTTTTTTTAAACGTGACTCAAATCGTAAA 11193 30 93.3 30 ............................CA AGCACGAGGCCAATCTAGCATTCTTGCTAA 11133 30 96.7 30 ............................A. GCAACAGCAATACAAATTGCTATGCCTACA 11073 30 93.3 30 ............................GC TATGGACAGGTTCGTTTAAAAGTTAAATTC 11013 30 96.7 30 ............................A. TGAGGATTCACACCTAGAAACTGGGCAGCT 10953 30 100.0 30 .............................. CTGCTTGAACAACATGAATTGCCCATTCAG 10893 30 93.3 30 ............................AA AAATATTGATACGATGGATTAACAACAGAA 10833 30 96.7 30 ............................A. AAGCGTCATGAATATTTGGTTTGGCTTGAA 10773 30 100.0 30 .............................. ATCATTAGTGCCTCTTCGGAAATCAACTTT 10713 30 93.3 30 ............................AA AGAGTATGTATTAGAGGGCTATGCACTTAC 10653 30 100.0 30 .............................. AAAATAATTAAATGGTCTATCACCGTCTTC 10593 30 96.7 30 ............................A. TAGATGCAGCACACAGCAATCAGGGCGCTC 10533 30 96.7 30 ............................A. CGCGGAAGAGCATTCGGGTGAGTTGGATTA 10473 30 96.7 30 ............................A. GCAAAAGGAACGGCTGGCTAACGCCACTAT 10413 30 93.3 30 ............................AC ATTCCAGCAAACAACAGTGTAGATCCAATT 10353 30 96.7 31 .............................C TTTCACAAAAAATGATGGTTATTTTGAATGT 10292 30 96.7 30 .............................A TGACACGCTATCAAGTGACGGTGCAAATAA 10232 30 100.0 30 .............................. ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 10172 30 100.0 30 .............................. CTACAGATATAACTAATCAGTTAAATAACT 10112 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 10052 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 9992 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 9932 30 96.7 30 .............................T TCGGGGTGGTTTTATTTTGCCTAAATTAAT 9872 30 96.7 30 .............................T GTATTGTTGGGTTTCTAGTTACCAGAGCAG 9812 30 93.3 30 ............................GT CAACCAAAGAACCCCAAGCAAATCGAGCAA 9752 30 93.3 30 ............................AT TATCTAAGCGTCCCATTAGAAAACCTTTAT 9692 30 93.3 30 ............................AT GTAATCTTGGTATGGGAGGTGTAAAGCCAG 9632 30 100.0 30 .............................. TTGACCCATCTATTGATGCATCTGTAAATA 9572 30 96.7 30 ............................C. ACTGCTCCTAAAGCTCCGCCGACTGACATT 9512 30 93.3 30 ............................AT GTGAACATGCATGCATTGATGCAATATGCG 9452 30 93.3 30 ............................CC ACTGTAGTACGAGTAACGTTACCGACTAAA 9392 30 96.7 30 .............................T TTTCACCTGATGGATGCTGTATTAAATCGC 9332 30 96.7 30 ............................A. AGGGTTATGTTTTGGTTTCTAAGGATAAGT 9272 30 93.3 30 ............................AT CATACATTAACTTTAAATAATCATTCTGAC 9212 30 93.3 30 ............................AC ATGAAAAACTAGCTTCCACGACATCAATCC 9152 30 93.3 30 ...........T.................C TTGCTGTGCATAAGCCTGTAAGTTATTTAA 9092 30 96.7 30 ............................A. TTGCCCGGATCACGACGATCATTAGAATAA 9032 30 96.7 30 .............................T GGAGTCATCAATAAGAAACAATCCATTTAA 8972 30 93.3 30 ............................AT CTAATCGATGGTGAAGATTTTGAACAAGAT 8912 30 93.3 30 ............................GT TATCTCAATGGTGTGACTTGTTAGCACTAG 8852 30 96.7 30 .............................T AATGCAATTCGGAGCATGGCGTACCGAAGA 8792 30 96.7 30 .............................T GTGTGGACTCCTCAATCAGCATCTTGAAAT 8732 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 8672 30 93.3 30 ............................AT CTTTTTGCTTATAGTAACAAGTAGCAGAGT 8612 30 93.3 30 ............................GA ACTGCAATGCTGTGAGTAACGAACCTTGAT 8552 30 93.3 30 ............................AC TTACCAGACACAGCACCTTCTTGAAGCATC 8492 30 93.3 30 ............................AT GACGGTTAGTTACTTTTGATGTACCGCCAC 8432 30 93.3 30 ............................AC TAACTCACCGCGATAAATAGACGCGATACC 8372 30 96.7 30 ............................A. AGACACAGAAAAAGAATGTGAACAATGGGC 8312 30 93.3 30 ............................GT CGATTAAATCAGTCAAAGGACCCTAAGCCA 8252 30 96.7 30 .............................C AAACTCACAACCTAGAAAAGATTGCTAAGG 8192 30 93.3 30 ............................AT GAAAAAGCCCCATTCGTTGTGAATAGGGCT 8132 30 93.3 31 ............................AC CAAAAGCTTTACGGTAAGACACGTTATGCAG 8071 30 96.7 30 .............................A CGAAAACAAAAGATACTCATGCACCAGAGA 8011 30 90.0 30 ...............T............AA CAGCATTTACACCAGCAACCTTTAAAGCAG 7951 30 100.0 30 .............................. TTACATGCCCAATTGGTTGGCGCATGTCAT 7891 30 96.7 30 .............................T CTAAGCGAAGGCTAACGCTCACATTCAAAA 7831 30 93.3 30 ............................AA CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 7771 30 96.7 30 .............................T GATGCTGAAAACTTCACAGCAGGCAATCCA 7711 30 100.0 30 .............................. TAAAGGATGTGAGGAACGTCGTGAGTGGAT 7651 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 7591 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 7531 30 66.7 0 ...T...A...T.....T..C...AGCG.T | ========== ====== ====== ====== ============================== =============================== ================== 163 30 95.4 30 GTTCATGGCGGCATACGCCATTTAGAAATG # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //