Array 1 243001-241480 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYER01000004.1 Listeria monocytogenes strain N13-0581 NODE_4_length_296053_cov_57.5447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 243000 29 96.6 36 ................T............ TGTTGTATTTTTGCTGAAGTTCTTCATATGCATTGA 242935 29 100.0 37 ............................. GCGTCCAGTAGGTATGCATAACGGTTGTTTTTCCACC 242869 29 100.0 34 ............................. AATTGAGTGTTGAGCTCACCCACAGCATCACCAA 242806 29 100.0 35 ............................. AAAATATCTCGTAACACGTCTACTTTTACATGACC 242742 29 100.0 35 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCT 242678 29 100.0 36 ............................. ATTGTATATATATTTCCATATTTTGTAGCCCAAATT 242613 29 100.0 37 ............................. TTGCTTAATTTTAGGCTTAGGTGTGGCGGTGTCATAG 242547 29 100.0 37 ............................. TTCTTTTATCCCAACCTATAGACGTATAAGTATCTAT 242481 29 100.0 34 ............................. AAATTCCTCCATCTGTTACTTTATAGATTTCATG 242418 29 100.0 34 ............................. AATGCTACGGATGCTGAACCTAGTGCTACTTTTA 242355 29 100.0 34 ............................. ATGTACCTCGCCTTTTTTGTCTTCATAGCGCCAC 242292 29 100.0 36 ............................. ACCGTTTTGGCGCGCCGCAGTGATAAAAGAAGTGGC 242227 29 100.0 34 ............................. ATAGCTTATCAATCCGTTGGACAGATGAACCTTT 242164 29 96.6 35 ..................A.......... TTCGTTAGCATTAACGCTGAAAATCAACTTCATGT 242100 29 96.6 37 ................T............ TTTGTTCGATTTCGCTAATTTGGTAGTTTGTGACTTC 242034 29 100.0 37 ............................. GTGGTTGGCAAGAAACCTTTTTTGACAGGTAATTTTT 241968 29 100.0 37 ............................. AAAATAATCATTAATGCAAACGCAATACAAATGACTG 241902 29 100.0 38 ............................. GTGGTAACAGTGTTCTTATTTCCTGGCGGAGCGCTTCC 241835 29 100.0 34 ............................. TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT 241772 29 100.0 37 ............................. TCGTTCGACGGCTTAGACAACCATCACGCTTCTTTAA 241706 29 100.0 37 ............................. TTTTCATCGCTGTTTTAGTGTCATATCCTAGTCCTTT 241640 29 96.6 37 ...................T......... ACTTTCTTCACGAGTTATATGTATAATTTCATCCACC 241574 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 241509 29 93.1 0 .......................C....C | A [241484] ========== ====== ====== ====== ============================= ====================================== ================== 24 29 99.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGGAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //