Array 1 457157-455593 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033048.1 Virgibacillus sp. Bac330 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 457156 32 100.0 33 ................................ TGTTAATTCTATTTTTGCAGGTTTTTTGTTTAC 457091 32 100.0 35 ................................ TTACAAGTAGTGAACGAAAGAAAAGTAGCGTTGAG 457024 32 100.0 34 ................................ ACATATGTACCAAAATCTAGAAACTCCATAAAAT 456958 32 100.0 36 ................................ TGTCCTTAAAGATTGACTATCTTTGTCGAATATCAT 456890 32 100.0 34 ................................ TTACTTTCTATATTTATTATACCACTAAATTTTT 456824 32 100.0 34 ................................ ATCAAGCTTACACAAACCCTTACGAATCATTTGA 456758 32 100.0 33 ................................ TTGAGAGTCGCTTTATCTGGCGCTTCTTTAATT 456693 32 100.0 35 ................................ ACCCTTTCCGCTTCTAGTTGTTAAATGATAAGCTA 456626 32 100.0 36 ................................ ATCCTCTTTTCCGACTATTTTTATAGATAATTCTTC 456558 32 100.0 35 ................................ ACTATTAATTTTTAGATCCGTAATGCGTATTTATT 456491 32 100.0 35 ................................ CCCTGTTTGGTAGTCCATAAAGTGCAAGCTGAACC 456424 32 100.0 34 ................................ AATAATCCTGTAGACATCAAAAAAACATTTGCTA 456358 32 100.0 33 ................................ ACGATGTAATTACGAATCGTATCCTCTTTACTC 456293 32 100.0 33 ................................ ACGATGTAATTACGAATCGTATCCTCTTTACTC 456228 32 100.0 36 ................................ CGTACCCGATATAGTTTTACGTATTTCTACTTTCAT 456160 32 100.0 36 ................................ ATTTTTCGTCATCCTTTCGGCTTAAATTTGCGCAAT 456092 32 100.0 35 ................................ ATCATGCCTATATGTCTTATCACCATAAATAACTT 456025 32 100.0 36 ................................ TGGTTAAAAGAATATGTAGAACTAAACCTCAAACAC 455957 32 100.0 34 ................................ TACAAATTTTTTCACCATTTCGTTTAATTTCATT 455891 32 100.0 34 ................................ CTTGCGGTCCTCTATCACCTTTTGGTCCTGTTGG 455825 32 100.0 34 ................................ ACACTGGGAGCTGGGTAAGCTCCTTGACGATGAA 455759 32 100.0 35 ................................ TAAAGAAGCGCAACATTCATGTGAATAAACTGAGG 455692 32 100.0 34 ................................ TGGTTGAACTCGTCAATCATGTCGATTTTGCGCC 455626 31 90.6 0 ...........................-.C.G | AA,A [455599,455605] ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.6 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGGAAATAGCATTAAAAACAAGAATAAAGATGAAATTTTAAATATTGATCCAGAATTAGAACTCTGGTACAAAGAATTACCAAGCAATGGAGAGGAGGATATGCGACGTCTTAAAAAAATTTGGGATGTTTTTAAAGAGGAATAAAATTGGTGTCGTAAACTTTCTTCATTTTAGAGTGTATAAGAAATTTTTCTATTGGAGTTTGGTTTCAAAAAGGCGTTCAGAAATTTGCTTTATATAATACGTCAACAGATAACTAAAACTTTCATGACCGCCTTTTGTGTATTCATTAATTGTTCTAAATACAAAAATTTTTACATAATATACTTGGTGCGAACCCCAAGTGCACATAAAAACCCAGGGGGATTCGCACCAAAATCCGCTTGCTTTTTTGATGATTTTTGTAATAATATTGAAGATAATTAGTAATATTTAAGATTTTCAACTTAAAAATGGACTGTTTTTGATTATTTTTGTTAGTTTTTAGGATAAAATCGCA # Right flank : CTGGTATAATAGCCATTTTTAGCTTAAAATAATTCAGAATTATCCACCATATCCTTTATTGAAGATGTTTGTAACTTCCCCCTATAAATTTGTAGTTGCCACTAGTAAACCAAAGTTTTTAGTGATCAAGTATTAAAAACATACCTATACATAATTTGAAAACTTGCAGGTGTTTCTTAGCCATGTATAGAAGTCTACTATAATAAAAGAGTTAAGGGGAAAGGCGAGTTTTATTATTGAGACAAGAACTATAACTGGGTTATTTACATTTGTTTTATTAATGTGCATTTCAATGGCGAATATCAAGATTTGAAGCACCAAATCGGAAAGGAACATTTTTTTAAGTTCAATGTTAGAGGATATCCTGACGGTGATAACGGAAAAGCCGAATTGTATCTAAGCAAAACAACGTATTGTTTAAATTCAGTAAGCACGAGATGGTATGATTAATTATACTTGTAGCATAGGCATAACATATTAAGGGGTGATTCATTTGAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 467272-465112 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033048.1 Virgibacillus sp. Bac330 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 467271 32 100.0 35 ................................ AATTCTTGTTCCAGATGCTTTAGAAGTATTAAAAA 467204 32 100.0 34 ................................ CAGGACTTTTATCCATCGACATTAGTGATATTTC 467138 32 100.0 34 ................................ TAAAAAATCTCCAATTAAATTTCCTCTTTTGTCG 467072 32 100.0 34 ................................ TCCTATTTTAGCAGAATTAGATATATTTAATATT 467006 32 100.0 36 ................................ TGCCATTCCAGCAACCTTATATCTTTCTACTAATGC 466938 32 100.0 34 ................................ ATATCATCAACTGTAATTGTATAAATAACGTCAA 466872 32 100.0 34 ................................ ACTTTGCTACTTTAGCAGACGGCGTACGTTACGC 466806 32 100.0 37 ................................ AGGGTGGCAGAAACGTAAAGATATTTGGTTTGATAAT 466737 32 100.0 34 ................................ TGTTTATAGGGGTGTTTAATAATGAATAATACAA 466671 32 100.0 34 ................................ TGCCACACTGCCCACTAAAACAACATATCCATTT 466605 32 100.0 36 ................................ TTCCTTATTAAGGCAGGGGAAGATTCCGCACCAAAG 466537 32 100.0 34 ................................ GAAATACATTTTAATGGTAAACCAACACTTACAA 466471 32 100.0 35 ................................ GTGTGACTCCGTTTAATAGTCGCCGCTCATGTGCG 466404 32 100.0 37 ................................ TATCGTTAGTATATTTTTAATATCTATCCTTGAGTAT 466335 32 100.0 34 ................................ AACAACCCGGAAGTAATGAAGCTTTATAGGCAAG 466269 32 100.0 34 ................................ ATCAATAAATCCGTCTTGTGTTAAAACAAACTTC 466203 32 100.0 33 ................................ GTTAAATCTTTTTGTCTCCATATCTCTTTGTAT 466138 32 100.0 34 ................................ AACTTGTTGTGGTATTTCAATATCTAATGTAAAA 466072 32 100.0 34 ................................ AACTTGTTGTGGTATTTCAATATCTAATGTAAAA 466006 32 100.0 34 ................................ CTTTCTAAGTGTCCACGTATTACAACATTTTCGG 465940 32 100.0 33 ................................ TAACCGCAGAGGAAGCTGTTGCATTTGGTCTTG 465875 32 100.0 37 ................................ GTAAATGGCATGACGGGGAAATTGTTTTAAACGACAA 465806 32 100.0 35 ................................ TTGTGGTTTTTTAATATTAATTTGGCATCTGCATC 465739 32 100.0 34 ................................ CTGTGCAATAGCAGGAATATATTTAACGTTCTTA 465673 32 100.0 35 ................................ CTCGACGCACACGCATTACAGGCGGACTACAACGC 465606 32 100.0 36 ................................ GTCAAGGGGCGTACTTACAAGGTGGCGCAAGTTAAG 465538 32 100.0 34 ................................ CTTCTTTTCTTATAGCTGTCTTGATATATCCATC 465472 32 100.0 34 ................................ GTTTAATCTGCGCCGTTCTTTCGTTTGTTCCTTC 465406 32 100.0 34 ................................ AGACTTAGACTCTATCGTTAGCCTACCAGTTGTA 465340 32 100.0 33 ................................ TTTATCTATTGAAGGAATTTTGATTGATTTAAT 465275 32 100.0 35 ................................ ATCCATGTTATCCTTAAATAGCGTGTCGGTATCAC 465208 32 100.0 34 ................................ TTTTTGCACACGTCCTGTTTCAATTAAATTCATG 465142 31 78.1 0 .........G...C.......AC-..G.G... | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 99.3 35 GTCGCACCTAATATAGGTGCGTGGATTGAAAT # Left flank : GACCTTATCATATTTATGAATTATTGAGAAGTTACCAATTATCCTAAAATTTCATGAACACATTCCTTCCTTTTGTAAGAACAACACGGATAACCATGCTGCTACTAAAAAGATGAACAAGTAAATGTCAAAAAATATCGTTACTGTGATTTAAATAAAATTGCTATAAGGAAGACACGTATAGTCAAGAATAAGTAATATTGACGTTACAAAAATTTGCAAGCTAGAAACTAAAAAACAGTATTGTACAATTATATTCATGAAATGACTAATTATGAATTATGCCTTATAATGAATATAAAATTATTCATATCATTTCAGTTTACTTTTTAGTGCGAACCCCAAGTGCACATAAAAACCCTAGGGGATTCGCACCAAAATTTAAGTAATATTACGGTAATATATGTAATATAATTCCATTTACTCAGATTATTTGCGATTTCTAAGCTGAAAACGGGCTGTTTTTTATGATTTTTGTAACTTTTTAGTATAAAATCGCA # Right flank : CATCACATAAAACTTCAATAATCATGAAACATCGCTTGTATTTCTGATAGGTCATCCGTCAGAGTAAGTGCTAACATTAACAATATTCTAGCTTTTTGCGGTGACAAGTTATCTGCGGTTATAAAAGGAAAAGTATCAAAACTTTCAATAGGGACAACCCGTCCTTCAAAGCACCGACTACTTCTAACCACTACTATTCCTTTTTGACAGGCTTTTTTTAGCGCCTTCTCCTCTTTTGGGGAACACCTTCCCGCCCCCGTCCCAGCTAACACAATTCCAGAATACTTCCCACTATCAACAATAAAATTAATAATATCTTCGTTTACACCAGCGTATGAATACACAATGGCCACCTCAGGTAAGTTTCTAACGTTACTATTATCATTAAACACAGATTGAAAAGTATGCTTTCTATTTGGATATCTATCATATAGCACGGTGTGTTCTGCGCTTACATACCCTAAAGCCCCTACTTTACCTGATTGAAATGTGTCCAAGCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTAATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.10,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 477666-477101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033048.1 Virgibacillus sp. Bac330 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 477665 32 100.0 33 ................................ CCATAAATATCACTCTCCAATAAAAGAAAATTC 477600 32 100.0 34 ................................ GATTGTCTTTGATAAAATCGATGTCACTAGCGTT 477534 32 100.0 35 ................................ ATCATTGCGTAATCGCATTGAGCACCCCCATAAAC 477467 32 100.0 34 ................................ CTTCTCCGCCTGCTCCTGTTCGATTTGCGCTAAT 477401 32 100.0 35 ................................ ATTTCTGCCGCTACACCTAATGCTTTTAAGATCAT 477334 32 100.0 35 ................................ AGCAAGCGCGCGTTGATTTGCAGTGGAAGCAATTG 477267 32 100.0 34 ................................ CAAAATTGTAGAAGATCATAATTATATATGGAAT 477201 32 100.0 35 ................................ CCTAAGTAAGGAAGATTCTTTTTTAAATTTTTCAG 477134 32 93.8 0 ...................T...T........ | AA [477108] ========== ====== ====== ====== ================================ =================================== ================== 9 32 99.3 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ATCATATCACAAACAAAAGGTGGATGAAATAAATATTTAGAAATATTTTATTTTTCTGTAACTTGATTTCATTGTTTGAAGATGTTTGCCTAAAGATTGTAAAATTCATTCTTTTACACAATCAAACTGATTTTGTGTTCACTAAACTCGCTTGCAGTGCGTGGCAGATTAGATGGTACTATCTTCATGCATGAAATGACGCTTTTTTTATAAAGTGAAACTTCCATGCGCAGGGCTATTACTACTTGGCATGACTTATTATTTGAACTATCATATAAGAGAAAATATGGTTTATTGGAGAACTTTTTTAAGAAACGAAATTAAAAATTAGGTGCGAACCCCAAGTGCACATGAAAACCCCGGGAGATTCGCACCAAAAATCACTTGCTTTTTTGGTGATTTTTGTAATAAAGTTGAGAGTAACTAATCATATTTGAGATTTCTAATCTAAAAATGGACTGTTTTTAATTGTTTTTTTTAATTTTTAGGAAGAAATCGCC # Right flank : ATAGCTCAATAGCGCCCTTACCTCGTGGAGTAGCATCTTGTATTAAAATCAACCTATCGTAGTCCTTCTTCGTCTAATAGTTACAAGGAGGAGATACTATGAAAGAACAAATTAATTATTTGATTTTCTCAATACTGACATTCGTTGGTTTTACGTTGATGTTTCCTGAGATGGGTAATGTAACTAAAACCATATATTTTGCATTCATTATATGGACCTTCATACTCATCATAATTTCAATAAGAATAATAATGAAGAATAAAAAACATCTTAGCTATTTTAATTACTTAATTAGTTTCCAAAATATAAGTCACATGAAATAAGTTATATTTCATGTGACTTATCATCAAATAATCAATAAAACTGCATACCATTAATGACTCTTAAGAAAAAAACCATTAAGCCAAAGGTAGTTGGTACCTAATTACCCTCATACATATCATCTTAACAAAGGAATACGGTCTCTATATAGCTCCATTTGCTTTAGATTTTTATCATCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3698719-3698219 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033048.1 Virgibacillus sp. Bac330 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3698718 32 100.0 34 ................................ TCATTAACAGAAGCAATAAAAATTAAGCGTTACT 3698652 32 100.0 34 ................................ TGCGATTAGCGCCGAACTTTTTCGCCCTTTCCCA 3698586 32 100.0 36 ................................ ACCTCTTATTGGATAGTGTCGTATTCTAATTTTTCG 3698518 32 100.0 35 ................................ ATAATGGAATATCCATCTTCATCAGCTTTTTCATC 3698451 32 100.0 35 ................................ TGAAACTACAATAGTTCCACCACTCAAATTAATAA 3698384 32 100.0 35 ................................ TTTACGTGTTGGCTTGTCATTTTCCGCTAAAAACA 3698317 32 100.0 34 ................................ TGACCCGATCTTCGTTTTTGACTTGCTAATAGGT 3698251 32 71.9 0 ......T...............AT..ATCTTC | A [3698224] ========== ====== ====== ====== ================================ ==================================== ================== 8 32 96.5 35 GTCGCACCTTTCATAGGTGCGTGGATTGAAAT # Left flank : TTAGACGAGTATCCACCATTTTTGTGGAAGTAGGGATAAAATGTTAGTATTAGTTACATACGATGTAAACACGTCAAGTGATGGTGGACAAAAGCGATTGCGGAAAGTAGCTAAAGTATGTCAAAATTATGGTCAGCGTGTTCAGCATTCTGTTTTTGAATGTATTGTTGACGATATGCAATTTGCGACATTAAAAATTGAACTTAGAGAATTAATCGATGAGGAAAGAGATAGTTTGCGTTTTTATCGGTTAGGGAACAATTATAAAACGAAGGTAGAACATGTTGGGGCAAAGGAAACCATTCAATTAGAAGATCCATTAATTTTTTAGTGCGAACCCTAAGTGCACATGAAATCCCCGGGGGATTCGCACCAATAAAAGTGGAAAATATAGTTTGTTTTTAACAAAATTTAGCTGTTTTAAATGTAAATTACCTGGATTCTCTATTATAAAAACCCATTTAATTCCATAAAAAGTAATTTTATAGGAAGAAATCGCA # Right flank : CCAGCATGCATTAAACACGTCCCGTTATTTTAGGAGATGAACCATTTATTTTCCATCTTATTGCTTTTTGTTAACCCCAAGGAGAATGTAAGGAATGATTGGTTGAATAAATGCTTTTCTCGATTGTTGACGGTTTGTTCGCCATTCAACAGAAACGCCATACATCCCCCAGCTTAGCATGATGGCCGTGTTTTTTAAGGCGGAACTTTCAGAAATGGAGTGCTGCTTTAATAATATGGGAAAAAATATGTTCGTTAATTTATCTATAATGATACGAGATATGGTATCCTCATAGCCTGATTGGCAGCGGTGAGCCAATGAATTCCAAAAGTTAGTAATAGCAATAAAAGTACTAATAATCATATCTTCATTGATTGCTTCATAATCACTTAAATCAAAAGTGATATTTGTTATTAATCCCTCTTCTAAAGCCTGCTCCAACAGATCAAATTTATCTTCAAAATGATAATAAAAAGTAGCTCGATTAATAGTTGCTTCAT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTTCATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3707227-3708990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033048.1 Virgibacillus sp. Bac330 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3707227 32 100.0 35 ................................ TGTTCTCGTCCTTGCCCATCGGGGTGAATTGTTAA 3707294 32 100.0 35 ................................ GATGGTTTGTTTAAAGCTATTGCAAAAAATGAGCT 3707361 32 100.0 36 ................................ ACCTAGAACGTATAGAAACACCACAACTAATTCCGC 3707429 32 100.0 34 ................................ AACCTTCACTGCAAGTTTTTTCCCACAACAAACC 3707495 32 100.0 34 ................................ AACAACCCGGAAGTAATGTTTCTACTAAAAGATC 3707561 32 100.0 36 ................................ TTTTAGTTTTTCTAATCCCATATTAACGATTTTAGC 3707629 32 100.0 34 ................................ ACTTGGAAGCTCGTAATGAACCATTAGAAAGGTT 3707695 32 100.0 35 ................................ CCGTTGCAAGACTTTCAAAAGTTTTTGATTGCATT 3707762 32 100.0 36 ................................ TGTAACTGTTAATGTACTAGGATTAGCTGATTCTAT 3707830 32 100.0 35 ................................ TAGCAACTTTTTGACAAAGTCTAGTTGTTTATCGC 3707897 32 100.0 35 ................................ TAGCAACTTTTTGACAAAGTCTAGTTGTTTATCGC 3707964 32 100.0 34 ................................ TAGAACAACGTGGTTTTCAGCATGTAGGAAAGTG 3708030 32 100.0 33 ................................ CTTGCGTTTCGCCGGTATCTGTTGCGTATTCGG 3708095 32 100.0 34 ................................ TGTTGCTTTAACTAATATATTTAAATATGATACT 3708161 32 100.0 33 ................................ CTTTTGTTACAGTTACCCCACTTTTTCTTTTGT 3708226 32 100.0 34 ................................ TTTGCCGATTTTTCGATGCTGTCGTATCCCTTTA 3708292 32 100.0 34 ................................ CATTTTACCCACGCTAACTCTACGTCGCAGCATT 3708358 32 100.0 35 ................................ AATGGATTAGATTACTGTCCACAATGTAATCACGG 3708425 32 100.0 35 ................................ CTCATGGTTGAAAATCACCTTTGCAGGCACAGCTT 3708492 32 100.0 34 ................................ AACGAAATTGACTTAGATGTTGCGCTAGTGTATG 3708558 32 100.0 34 ................................ ATGATTACCCGGAAAATGTAACAATTAGTGGCAA 3708624 32 100.0 33 ................................ CAATGCTTGACTGCATTGTGTACATCTATCCAA 3708689 32 100.0 37 ................................ CATGAGTAATAATATCTGATTTTGACGGTTCTTCCTG 3708758 32 100.0 35 ................................ TTCTACATATTTATTTAATTCTTTTTCTGTACCTT 3708825 32 100.0 35 ................................ ATGAAAAGGAACTTAGGTAAGGATTTTACCGATTT 3708892 32 100.0 34 ................................ CGCGGCTCGCTTGTATAACCTCTGCATGTACCCT 3708958 32 75.0 0 ....................A.TC..AC.TCA | C [3708975] ========== ====== ====== ====== ================================ ===================================== ================== 27 32 99.1 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : AACTTCGTTGTCACTTTGTCGAATATGCGCAATAAAACTCATGTAATCACAGCCTATCGTTTATTTTATTAGGGTGGATAGGAAAATAATGCCATGTTGTTCTTAGGTAAATTGTACCACAAACCTCCTCTATTGACTACGGATGAATAAGTATATATTTTTATTTTTTTGCTACATTAGAGAAGCTTGACTTGTCGTTAAGTCTTATGGAGAAAGCATTGGTCTCCTTATACTATAAAACTAAAAATTTCATACATAGTAAAACGATAAAATTATTGAAATCTAGCCACAATATACTACAATAATTAATAGAAGGGCTTTTATACTTTTAGTGCGAACCCCAAGTGCACATGAAATCCCCGGGGGATTCGCACCAATCAAATGGGGAAATATGGATTTTATATAACAAAAAATTGCAATACAAGCCTTTACTTACTTGATTTATACTTATAAAAACCCAATTAATTCCATAAAATTGAATTTTATAGGAAGAAATCGCA # Right flank : ACATGTTGTATTATAAAGATATCATTTATTAAACAATTGTTGTCTAAAATGTTGGTGTAAGAATGGAAATCTATGATGTCGATCAAGCTTTTGCATTACTGAAGTAATACAAGATTACAATTAACAAAGAAAGTGTGCGCAAATGGCTCCGTACCGGTGTCATCAAAGGAATACCGCCAAAATCACGCAAAGAAGGCTGGCGAATTACAGAAGAGGATTTACAAGCGTTTATCAAAAAGCGTTTGCCAGAAGAAATACTGTTTTCTAACAAAACATATGTTACAAACGAAAAACTAAAAGAAACTTTAATAGAACAACAAGCACGGGAATTAATGTGGTGGGAACTTGTTCGACAAAATATTTTTGAAGGATTTATTGATATCAAGAAAACAAGAATGTATGAATGCGTAGAACATGCAGATCACTCGAAAAAGTTTGCCCATGAAGTATGGGATGAAGTAAAGGAACATAAAAGAGGAGCGTCTAAACCTCGTATACCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3710869-3711964 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033048.1 Virgibacillus sp. Bac330 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3710869 32 100.0 33 ................................ CACTAATTCCAAATCAAGTGGCACACCAGCCTC 3710934 32 100.0 36 ................................ ATTATGCCACTACGTATTAGCGTTGTGCCGTCAAGC 3711002 32 100.0 37 ................................ GACAAGGTATTCGTTAACTCTCGCCCACCGAACCGAT 3711071 32 100.0 35 ................................ CAGGACTTTTATCCATCGACATTAGTGATATTTCA 3711138 32 100.0 35 ................................ AAAGCCGATAAGGATTACGCACTCGTAACGTATGC 3711205 32 100.0 34 ................................ CGACAACCTTAGCCGTAAATGCGATAGCTGCGCC 3711271 32 100.0 34 ................................ TATAGAGTCTGATGTATCTGGTTACAATTTATAT 3711337 32 100.0 35 ................................ CGTACCGTTTTTGGTTGGTTAGGTTTTGCCCCATC 3711404 32 100.0 37 ................................ AAGATTAAGAGATTACGAAAGAAAATCGAACAAGAAA 3711473 32 100.0 34 ................................ GTCTGTTTCGTCTGTCTTGCACCACAATTCTTTA 3711539 32 100.0 36 ................................ ACTTGTGCCTTCTGCAAGCATTTCCGAGTATTTCAA 3711607 32 100.0 24 ................................ CACAAACACAGAAGTTTTAGAAAT Deletion [3711663] 3711663 32 90.6 34 TGA............................. GTGTGGTCCCATTTCGTGATTTCATCGGGCCACG A [3711665] 3711730 32 100.0 34 ................................ TAAAATCGCTTTTACATCATCACCTTGACTAAAT 3711796 32 96.9 38 ............T................... CTCTTTTATCATCACTTGCTAAATTTAAGTGTGACAAA 3711866 32 96.9 35 ............T................... TAAACTCCATTTGCAGTTTGAACATCATCTGATCA 3711933 32 93.8 0 .......................A.A...... | ========== ====== ====== ====== ================================ ====================================== ================== 17 32 98.7 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : AACTTCGTTGTCACTTTGTCGAATATGTGCAATATAACTCATGTAATCACAGCCTATCGTTTATTTTATTAGGGTAGATAGGAAAATAATGCCATGTTGTTCTTGGGTAAATTGTACCACAAACCTCCTCTATTGACTACGGATGAATAAGTATATATTTTTATTTTTTTGCTACATTAGAGAAGCTTGACTTGTCGTTAAGTTTTATGGAGAAAGCATTGGTCTCCTTATACTATAAAACTAAAAATTTCATACATAGTAAAACGATAAAATTATTGAAATCTAGCCACAATATACTACAATAATTAATAGAAGGGCTTTTATACTTTTAGTGCGAACCCCAAGTGCACATGAAATCCCCGGGGGATTCGCACCAATCAAATGGGGAAATATGGATTTTATATAACAAAAAATTGCAATACAAACCTTTACTTACTTGATTTACACTTATAAAAACCCAATTAAATCCATAAAATTGAATTTTATAGGAAGAAATCGCT # Right flank : TAAATCAAGCCACTTTCCAAAATACAGCCAAGCCGAACAATATAAATGTTCGGCTTGGTTAGTTCTATCAGCAATTAAAAGCGGTTAAGCCTCACCTGCTGCCACATTTAAATTCCATTAAAAACCTTTTCAGGTATAATTTCATAAAAACATATTGAAACCCACACCCTATCTAAATCGTAATAAACATAAATAGAAAAGAAGATATTTCTACTGCATTTATAATCTTATTTAGAAAACTATCTTATAAAAGACTGCAAAGGAAGGGTTTATTTTGTACAAAAACATAGAAGAACCGAAACGAAAAATTTCACCATACGCTATTAATGTATGGCGGATTACAAACACAATCGGACATACTATATTTCTCCTTATTTTAGTCGTTTTACTTATCATGGACTCCCACTTTGCTTGGTATAGCTGGATTAGTTATGTATTATGGGGCTTATTAGGTTTTACGATTATCTCTGCTGTTTGGAGTATAGTTTTTGAACCGACAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //