Array 1 648692-647507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032654.1 Lactiplantibacillus pentosus strain ZFM222 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 648691 28 100.0 29 ............................ TGCTGCTAGTATCACTAGCATAATGATTG 648634 28 100.0 33 ............................ CCTGTTGGTTGTTGCGTACATATGACCCAGTGC 648573 28 100.0 33 ............................ TGGTAGAAGCAACTCATAAAACGCATATGAGGT 648512 28 100.0 34 ............................ TAAAACAAATTGCCGTCAATCGTATTGTTGATAA 648450 28 100.0 33 ............................ TTTATCAGTGGCGGGAAATAATTTATCATGATT 648389 28 100.0 33 ............................ TAATACCGCCGGTCAAGTGAACGACTCCGTTCA 648328 28 100.0 33 ............................ CTTCCAACGATCAAGCGCGAGAAGAACGTCAGC 648267 28 100.0 33 ............................ CAAGTATTTAAACGAACTGGCTTAAAGCAATCT 648206 28 100.0 33 ............................ CTTGCAGGCCTCGAACCTGCGCCCCTAAACTTA 648145 28 100.0 33 ............................ CGTGGCGAGTGCCGAACGATTGGCAGAAGCATT 648084 28 100.0 33 ............................ TATCAGTGGCGCCGCTCATCGTTTTGGCCCGGT 648023 28 100.0 33 ............................ CGTATACGTTAACGTAGTATCTGGTTTCACCAG 647962 28 100.0 33 ............................ CGACTACATGAAAATCATTTATGGCTGGAAGCC 647901 28 100.0 33 ............................ TAGAAACTTGACGTAAGACTGCCATGTATAACC 647840 28 100.0 34 ............................ TTTCATGCAAACGGTTTTTCGGGAGTACGACAAA 647778 28 100.0 33 ............................ CGAGTACTGGCGGGCCGAGAAATATAACGATCC 647717 28 100.0 33 ............................ TTTTAATCATGACTAACTCCTCCAACCCTTTCA 647656 28 100.0 33 ............................ CCGCCCAGGGGCGAGCGGCCCAGACTGCTAAAG 647595 28 96.4 33 ..........C................. TGCCATCACAACACCGGACGACTGCTCCAAAAA 647534 28 89.3 0 ..........C......A...A...... | ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.3 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TCGCTTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACTCGAACAGACATTGAATTTTTGGCAAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGATGATTTTATAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTAATGTAAAACCTCAATTTTGCAATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAAACAAAGCCTAAAATAAGAAAAAGTAACATGCAAATCACTCCAAATTTCTTGCGCATTGAAATATTTAGTAAGCGGTTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAACGCATCAAAAAAATCACATCGCAATGGAAAATGCAGATGTGATCTTTCTGATTGTTCGATAGTTTTTTGCTGTTGAATCCGCTTATCAATACGATGCTCTGTTGAGGCGTAAAAGTAAACATCTTCAGTCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGTATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTAAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGCAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATGCTCGCTCCAATATGCTTGGCTTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 897202-895994 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032654.1 Lactiplantibacillus pentosus strain ZFM222 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 897201 28 100.0 33 ............................ TATCCATCAATTAAATCAACTGAATTAATTGTA 897140 28 100.0 33 ............................ TAATAACCGGTTCTGGCAAGTAAGCGTTATAGC 897079 28 100.0 33 ............................ TTCGTTATCCATCGAAGTCAAACTCCGTCACGA 897018 28 100.0 33 ............................ TTCGTTATCCATCGAAGTCAAACTCCGTCACGA 896957 28 100.0 33 ............................ TTCGTTATCCATCGAAGTCAAACTCCGTCACGA 896896 28 100.0 33 ............................ TGATACGGTAATCGCTGTGGGCTAATTGGTAAG 896835 28 100.0 33 ............................ TGATACGGTAATCGCTGTGGGCTAATTGGTAAG 896774 28 100.0 33 ............................ CGATGGCGAAAACGAAGACGGAACAGATGAGGG 896713 28 100.0 33 ............................ CGCTGGGGGCGCCGCCCTCGATGACATCGGGGC 896652 28 96.4 34 ..........C................. TGATGATTGAGAGGCTATGAGATGAGTTTGATAG 896590 28 96.4 33 ..........C................. CGGCCCAGCTTAAAACTAGCCGGGCTAGCATTC 896529 28 92.9 9 ..........C...............G. CTTCTCGTA Deletion [896493] 896491 28 96.4 33 ..........C................. TATGCCGAATACATTGAAAGTGGACAACGTACT 896430 28 92.9 137 ..........C..G.............. TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTGGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAAAAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 896265 28 85.7 33 ..A.......C.C..A............ TGATCGTTTTACCAGATTGGGTAGTAGCAGCGA 896204 28 85.7 33 ..A.......C.C..A............ CTGTCACTTCTGACTTTTCGTTTAGTGCTGTCA 896143 28 85.7 33 ..A.......C.C..A............ TATGAATTGGTACAACCACGACGAAATTCCATT 896082 28 89.3 33 ..A.........C..A............ TCCAATGTGACTAACCGAAATTTCTACGCTAGT 896021 28 82.1 0 ..A.........C..A..........TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 19 28 94.9 38 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATTGATTTTTTAAAATTCTGGATATAGGTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAACGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAAGAATTTGTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3064017-3065570 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032654.1 Lactiplantibacillus pentosus strain ZFM222 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3064017 36 100.0 30 .................................... TGAAATGGGCGCAGTCAAGGCTGGATCACT 3064083 36 100.0 30 .................................... TATTTTCTATGCGCTGAAATTCTTTTAGGT 3064149 36 100.0 30 .................................... TTATGTACATGTTAAAGGCCGTTAAGTTTC 3064215 36 100.0 30 .................................... AAGAAAGCTCCGTAGCCTGTCGCGCAAGTT 3064281 36 100.0 30 .................................... TAAACACCATCATCACTAAGTAATCCAGAT 3064347 36 100.0 30 .................................... GCTAGTCAGCTGGAAGTTGATGGACTAAAA 3064413 36 100.0 30 .................................... ATTTAAAGGCTATCCCATCAATGGTTATAC 3064479 36 100.0 30 .................................... ACGCGATTGTTGCCTTGCGACCAATACTCT 3064545 36 100.0 30 .................................... GAGAATTACCGCGATCAACAAGAACGGGTC 3064611 36 100.0 30 .................................... AATAAGCCTTTTAATGCCTTGCTCAGGGCA 3064677 36 100.0 30 .................................... CAGCAATGTGAATCGAATCAGTGTCACAAT 3064743 36 100.0 30 .................................... GGGATGTCGGTCAGGGTGGTGAAGAAACCA 3064809 36 100.0 30 .................................... TAACGACGCTAAAGCCACGACCGCTAAAGC 3064875 36 100.0 30 .................................... AGCATACCCTGGTTGATTGCTCAGTGTGTC 3064941 36 100.0 30 .................................... TTACAACTTGCATCCGCCGTTAGTTTGGTA 3065007 36 100.0 30 .................................... ATTGTCTGAGACGTCGGTACCAGTAATCAA 3065073 36 100.0 30 .................................... TTCTCTTTTTCCGTAGTTATATAGTGTAAG 3065139 36 100.0 30 .................................... ATTCTGGCGCCGGTGGTTGGCCGGTGATCC 3065205 36 100.0 30 .................................... GGTGAGGTATGCGGTGAGATGGTTATCTGT 3065271 36 100.0 30 .................................... ATGGCTAAACTGAACAAAACACAGACGTAT 3065337 36 100.0 30 .................................... GTTATACCGTCTAAATACCCGCAACACTCA 3065403 36 100.0 30 .................................... CAACTTGAAGAAACTAGTTAAGAACATCCG 3065469 36 100.0 30 .................................... CGAACTGGCACTTGTACATCTAATGCATTT 3065535 36 94.4 0 .......................G..A......... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCCGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCCAGTTTTCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : CAGGATTGTTTCGACCTGTCATCCGGGTCGCCGACAGTGGTCATTTTAAGCAGTTGTAGAATAACCCCCGTGTTACCGTACATCTTGAATAGTAATCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCAATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //