Array 1 16604-15600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERRF010000037.1 Streptomyces coffeae strain CA1R205 37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16603 28 100.0 33 ............................ ATTCAAAAACTCGGAACACCCAGCGCACACAGG 16542 28 100.0 33 ............................ TCCACCCGCCCCAAGAAGCGCACGATCCTTGGG 16481 28 100.0 33 ............................ ACCTACAGTGCTCTGGCTGGTGAATTCGAAGAG 16420 28 100.0 33 ............................ AACAAGGCGGCACGGGCGGTAGGCCCGGAGTCG 16359 28 100.0 33 ............................ CAGCAGTACGAGGCCACCGACGGGCTCGGCATG 16298 28 100.0 33 ............................ TCCAGCGTTCAGCGGGTGCTGTCCGCACCCGTG 16237 28 100.0 33 ............................ ATCGTGGATGAGGTGAGGCCATGACGGACGCCG 16176 28 100.0 33 ............................ ATGACGCATGGAGATCCCTCTCGGTGAGATGTG 16115 28 100.0 33 ............................ CCCCTGTGGCGACCGCGTCCCCCGACGCGTCGG 16054 28 100.0 33 ............................ ACGCGGGGCGGCCTCATTGGGGACTGGGTGGCG 15993 28 100.0 33 ............................ CCCTCCTCGAGACGTACATGCCGCAAGCCCTCG 15932 28 100.0 33 ............................ CTGTCCAAGCGGGGTCTGTCTCAGGACCTGATG 15871 28 100.0 33 ............................ CAGGGCATCACCCAGTCGCTCCGGCAGCGCGGG 15810 28 100.0 33 ............................ GCCAGGTCGGCGAGCGCTTCGTCGTAGCTGTCG 15749 28 100.0 33 ............................ GTTCCGAATGTGTAGTTTCCTGACGCTGCCTCG 15688 28 100.0 33 ............................ CGGACGACGACCACCCGGCGCCGGATCGGCGGG 15627 28 85.7 0 ............A...A.......G..C | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 33 TGGTCCCCGCCGGCGCGGGGGTGTTCCG # Left flank : ATACGGCCCAGATCCCCGCGCAAGGTCTCACTCAACCCCTCACGAGCGCGCACATCACACAACTGAAAACCCGACAGCTTCCCCAAATCGTGCAGACCAGCGCACAGCGCGGTCATCGCACGAGCCCGACCAAGGTCTCGCCCCAAACCCAGCCCAGCAGCAATGCAACGCCTCTGCGACTCCGACAGATACCTGTCCCACAAATGCAGCGCCATCGCAGCCGCATCCAGCAGATGCCGCACCAACGGATACGGCAGAAGCGACGGATCCAGCCCCCGTGACTTCCCCCAAGCGGACTCATCCGCTCCCTCGAACAACACCGCCACGACGGTAGGCTCCTCCCTCACACCAACCATGCCCAACGACCCAACCACACAGCACTGACATCCACCGGGCAGAGATCAATACAGCCCCACCAGAACGCAAGGAAGGGCATCCCGGTGCAAGGAGCGTTCGCAAAGGGATGACAAATCGCCTACCAAAGACCAGGTCAGGAAGTG # Right flank : CTTCCGTGGACGCGGAGACCCTCACCTCACGCCAGCAGATCACTGTGCTGACGCGCCAACTCGGCAAGGACAAGATCCGGTTCACGCCCGGGGGATCGGGCATTCCTGGCAGCGCTGCTGCACCGGCTGCCACTGCACACCTCTCGGTCCCGGGAGGTCCAGTGACCGTCAAAAGATCTTGACCGGTCCTGTGTGATCTACACCATGCCCTGATGGTGGCCGACCGGCTCACGCCGCGCCTGAACCGGAGACTGTGCCCAACCGGTCAGAGCCGTGCCAAGGGCGGGTCCAGCGGTCAGACCGGCAAAGGTGTCGGAGGTAGACGCGCAACCCCGGATCCGCGTGGACGTTAAGCACGGCATGAATCGATCAATGGCCGCTACAGCGACCGCCGTTATGCTCTTGGTGGCGCCAGTCACTCCCGCTCATGCCTCCGGGAGCGGACACGACGGGCCCGTGGGCATCGGCGTCATCGGTGAGCAGCTTCACGTCCGGGAGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGTCCCCGCCGGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26489-28957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERRF010000037.1 Streptomyces coffeae strain CA1R205 37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26489 29 100.0 32 ............................. ATCCTCGCCCAGCGGCTCCCCCAGTGCTACGA 26550 29 100.0 32 ............................. TCGTCTCCAACGTCTCCAACAGCGCCACAACA 26611 29 100.0 32 ............................. TCCTTGATCATCATGCGGAACTGTTGAGCGGT 26672 29 100.0 32 ............................. CTCCGGCGTAAGAAGGTGCCCTTCGACGACCC 26733 29 100.0 32 ............................. CCATGTGACGGCTTCGCGGGCGGCTGGGGCCG 26794 29 100.0 32 ............................. CGGCTCACGTCCTCTCAGGCGAGCGTTCTGGG 26855 29 100.0 32 ............................. TCCTCTGCGGTGGATACGGCTTGGGAACCAGA 26916 29 100.0 32 ............................. GCTTCACCCTCGTTCGGCGCGGACCTGGTCGG 26977 29 100.0 32 ............................. GAAAGAGGGAGACCCGTTTCCATCTCCACTGC 27038 29 100.0 32 ............................. CACACGACTTCACCGCGCAGGACGGTGACGCC 27099 29 100.0 32 ............................. CTGCCGGTCGCGTTCGACCCGGCCGACGCACC 27160 29 96.6 32 ............................T GCTTCTCACCGTTCCTCCGCGCCACGGGAAGA 27221 29 100.0 32 ............................. ACACAGAAAGGGGCGGACCAGATTTGGGAGGG 27282 29 100.0 32 ............................. ACCCGCGGTTAAGGGACGGAAAACCATCCCGT 27343 29 100.0 32 ............................. CCGAACCGGCAGGCGCCCGGCTCCGCGTGCTC 27404 29 100.0 32 ............................. GTGGACGTCCACGTGCCGGACAGGGACGGGGA 27465 29 100.0 32 ............................. GAGGCGTGACATGGGAGCAGCGCTCCACCTCG 27526 29 100.0 32 ............................. TCGACCGGTGAAGCAGCCCGGGTTTTCGGCAA 27587 29 100.0 32 ............................. TCATGACCACACAGCAGCGGATCGAGCGGGCC 27648 29 100.0 32 ............................. GCGGAGAAGCGCCGGGCCGAGGCTCTGATGCT 27709 29 100.0 32 ............................. CGTCTGCTACAGCGAGCGGCGAGCCCGCTGGG 27770 29 100.0 32 ............................. GCGGTTCCCCTCCCCTTGGACATCTCGATCAG 27831 29 100.0 32 ............................. ACCGTCCGCGACGCCAAGAAGCTCGGTGAGTA 27892 29 100.0 32 ............................. TTGAGCAGGTCCGGCCGCCCGCTGACCAGCGA 27953 29 100.0 32 ............................. CCGCGGGCGAGGCTTACACCGCGCGCGGCACC 28014 29 100.0 32 ............................. CGTGAATTCCGCGCCCCCCGGCATTTCTCGAA 28075 29 100.0 32 ............................. TCGACGCTGTGGGAGACGCTGAGGAGGTAGTT 28136 29 100.0 32 ............................. TGAGCAGACGATGACAGACCTCCCCTCGGGCT 28197 29 100.0 32 ............................. TCCAGCGCCTCCAGACCGACGTGGACAGCGCT 28258 29 100.0 32 ............................. GGCCCGGCACCGGGCGGCGGGCCAGATGAGCT 28319 29 100.0 32 ............................. CGGCCGTTGTGGCGGACGAAGGGCCCGGTGGT 28380 29 100.0 32 ............................. AAGAAGCGCCGCAAGCGCCGGTGAAGCGCGCG 28441 29 100.0 32 ............................. GCTCTTTCCTTGTCCTGGTACGCCGTGGTCAG 28502 29 100.0 32 ............................. ACATCGGCGTGGTCGTGCAGCAGCGGGTCGAT 28563 29 100.0 32 ............................. CCATCACGCCTGCGACGCCCGCTGCGAGTATT 28624 29 100.0 32 ............................. ACGGGTACAGGGGCCCCGCAGCAGCGGCGAAC 28685 29 96.6 32 ............................T CCACCCTCTCCCGCAAGCTCGAAACCGCCCTC 28746 29 100.0 32 ............................. CTCCTCGCCCAGGTCGCGGAGATCGACGAGGA 28807 29 100.0 32 ............................. TGGCCGGGGCTCACGGCCTCGGCCACGCCCCG 28868 29 100.0 32 ............................. CCGGGCTGGAGGACGTAGCCCGCTACTGGGCC 28929 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.8 32 GTGCTCCCCGCCGACGCGGGGGTGAACCG # Left flank : GCATCGTCCGAGACCTCCAAGACCTCCTCACTCCCGGCTCCACTACCACCGACGACGACCCAGCCGAACGCCACGACATCCGCCTCGTCCACCTCTGGGACCCCCAAACCGGCACCATCCCCGCCGGAGTCAACTACGCACCGGAGGCAGGCTGACATGCCCTCCATGCTCGTCATCGCCACCACCGCAGTCCCCGACCACCTCCGCGGCGCTCTGAGCAGATGGACCACCGAAGTAGTCCCCGGCATCTTCGTCGGAACCGTCTCCGCCCGCGTACGTGACCAACTCTGGGACAGCGTTCAAGACGTCGTCGGCGACGGAGCTGCCGTACTCATCCACCCAGCCCCCACAGAACAGGGCTACACCCTACGCACCGCGGGCACCCGCCGCCGCGTCCCCATGGACTTCGACGGACTGACCCTCATCCGGATGACGGCACCCCTCGCACGGAACTCGGCAAAGACACGGCAAAGCGCCTACTAAAGCGCAGCTCGCGAAGT # Right flank : GCCCAGCGGCTGGTGCTGCTGGAGTTCCTGGATGTGCTCCCCTGAAGGGCGTCTTTATTTCCGTACGGTGGTTGACCTGGATCTTTTCGATCGCCCAAGTATGGGCATGATCTCTGATCGTGGGTCTGCGACTGCTCTACCTGATCTTCTGCCGACTCCTGGGCTGCTTCCTTGTGCTGGGTCGATCGACCGCGGCGAACAACGCTGAGATCCTTGCTCTCCGCCATGAGGTCGCTGTGCTTCGCCGGCAGGTGGAGCGGCCGCGGCTCTCGTGGGCTGACCATGCCGTGCTCTCTGCTCTCGCCCGGTACCTGCCACCCGTCTTACGTCGCAATCGGCTGGTCACCCCCGGCACCCTGCTGACCTGGCACCGTCGTCTCGTGAGCTGGAAATGGCGACAGGCACCAGCGAGCCCCGGTCGGCCACCGTTACCGGAAGAGATAGTCGTGCTCATCCAGCGCCTGGCGAGAGAGAACCCGACCTGGGGGTACGTCAGGATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCGACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 189091-188878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERRF010000013.1 Streptomyces coffeae strain CA1R205 13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 189090 30 76.7 31 C.CAC...C..T.................C AGAAGCTCACGGGCCTGATGGTGCATGATGC 189029 30 93.3 31 .................A...........A ACCCCACCACCATGTCCGACTACGACTTGCT 188968 30 100.0 31 .............................. TCGGGGACGGCTCCACGTACCGGTGGTGGCT 188907 30 90.0 0 ..........................GA.T | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.0 31 GTGCTCTCTGCGCGAGCGGAGGTGAACCGG # Left flank : CTATGCCCAGACGGACAGGTGATCGTGACCGGGCCGGACCAGGTTCCGCGCAACCGGAGCTCCTCCTGGCCGCACTGGGGGCACGCCACCTGGATAACCTCCGGCATGGGAGGCTCTGGGCCCTCTCCATAGGTGCTGTCCACATCACAGGCCCAGTCAACAATCTTGCCCGCGATGTCAGGACCTGCACTCACCGTAATGCGGCCGGCGATGTCGTATGGCTGGTCAGGATCAACGGGGGCAGAGTCAGGCATGAGCCGCACACTACTGGTCGCACACGTTGGTTACGAGATCGCCCGCCCCGGCCACTGCCCGACCGGCTCCGGGTGGCGCTCCCGCTGGCGGCCCGGGTCGTTGGCGCCGAGCCGGAACCACGGCTCCCGCCGCTGCAGGCGCAGCAGCGTCGTGGCGAGGACGCCCACCAGCCCTTGACCTGCGACTCACCTCCGCTCGCGCGGAGAGCACCACCTCCGAGTCGTCCCGGTCCATGGTCACTCCGA # Right flank : GTCCGGAAGCCTGCACGTCTGTACCCATAGCCATGTCCGCGGCGCCGTTCGCCGATCAGCTTCTAGTCTTGTGCTCTGGACATAGCCGGGATTTGGTGGCGCACGGGGGAGAAGGAAGGCTAACCGGTGGTCGACCGGGGTGTTGTCGATCCCTGGGAGCGGCAGAGCGGTGAGTCTCCCCAGGCGTTCGAGGCCTTCGCCGCCTACCGCCATCTCGGTGCGGCACGGAGTGTGACGAAGGTTGCGCGAGGGTTGGGTAAATCCACGACCCTCCTGTTCCAGTGGTCGCGGCAGTACGCGTGGGTAATGCGGGCGACGGTGTACGACCGTGAGCAGGACCGGGTGTTCCTCGCAGAGCAGCAGCAGGCGCGTCGGGATATTGCCCGTCGGCACGCCAAGCTGGCGCAGGCGTTCTTGGGCAAGGCTCTGGCGCGGCTCCAGGCACTTGATCCGCGTGAGCCTTCCTCACCGCGGCGGACTCCGGTGAGCTCCTCCAAATC # Questionable array : NO Score: 3.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCTGCGCGAGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //