Array 1 9872-6906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CALZ01000128.1 Lactobacillus equicursoris 66c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 9871 36 100.0 42 .................................... TTTAGAAATTTTTTTACCAAAGCGATCTAAAATATTCCATGG 9793 36 100.0 38 .................................... TTTTCCTCCTAATTTCACCTTGTCCAGTTCCCGGTTGA 9719 36 100.0 43 .................................... TCTTGGTAAAGTTTACCACCTTTACCGACATAATAGCCGTTAC 9640 36 100.0 38 .................................... TTAATCCTGTTTTTCAAGGATGTAGCGGGTATAATGTA 9566 36 100.0 39 .................................... TTTGGTTATTTGCCAATACGAGAAGAATCCTAAGTATTA 9491 36 100.0 41 .................................... TTTTCATTTTTGAGACTTCCTTTCTTTTTTTCTAATTGTAC 9414 36 100.0 41 .................................... TTTACCGCGTTGACTCGGTACCAAATATAAAGATTCTGAAG 9337 36 100.0 37 .................................... TCAGTCGTTTCTGAATAGTAGCAAAATTCACTTTGAC 9264 36 100.0 36 .................................... CTTCGCGGAAGTTATGGTTGTTGCCTCCCCATGTCC 9192 36 100.0 36 .................................... TTAGTTACTTTAAAACTTATATGTGGTAAATTGTAA 9120 36 100.0 44 .................................... GTTACCTCGTTTTCTTTTAACTAATTACATTGTAGCACTTACTA 9040 36 100.0 38 .................................... AACGGCTGGAAACTTTCAAAATGGTTTTGGGAAGACAT 8966 36 100.0 39 .................................... TAAACATCACCATTAGCCCGTTCATTATAGGCCTTTTCC 8891 36 100.0 39 .................................... AGTTCAAGCTTTCCAAACTATTTTGGTTGTTATCTTCTT 8816 36 100.0 40 .................................... TCCCATTCGCCCATCGGTGCGCAATCAAAGAATTTCTCAG 8740 36 100.0 37 .................................... GTGGGCGTTTTTAAACATTTGCGTTTTTTCTTCTACA 8667 36 100.0 39 .................................... TTAGTAGCAGTGTACTTGATTGCGTCGGCCGGTTCGCTG 8592 36 100.0 35 .................................... TAACCGCAAATTTGCGGCCTTTGCCCCGCTGGCTT 8521 36 100.0 37 .................................... GTGGTACAACCGCCAAACGCTTTCAAAAAATCAGAAA 8448 36 100.0 36 .................................... TTTTCGTCATTATCCTTTTGCATTAAATAAATTTTA 8376 36 100.0 38 .................................... TATCATCACTAACGAAATTGATAATTTCGCGGACTTTA 8302 36 100.0 35 .................................... TATTTACAGTTTCAAGACTTTTTTCTTGATTGTCA 8231 36 100.0 39 .................................... TTCATCGAACAGCTTGCTACCGTTAACCCAATAGCCTTG 8156 36 100.0 35 .................................... GAAAACTCTTTTCCTGGTTCAAAGATCATTACAGC 8085 36 100.0 39 .................................... GCAACTTTACCTGTAGCCACAGGCTTTTCAGTGCAAGCT 8010 36 100.0 36 .................................... AAAATTTCACAAACGATAACCTGTTCATCGAATAAC 7938 36 100.0 38 .................................... TTTGCTACACCTCTAAAATAGCTAAACATAGCTTTTTC 7864 36 100.0 43 .................................... TGGCTATAGTTGGTTACATAGAACCAGCCTTCCACCTGGTTCA 7785 36 100.0 49 .................................... TTGCCCGTCAATAACAAGGCTTACACATTCTTGTTTAGCTTCTTTTTGG 7700 36 100.0 38 .................................... CGAATTTCATAAAAATTGAAATACATTCAGTCATTACA 7626 36 100.0 37 .................................... ACCCTTTTAGAAAACTTTTTTTAAAAATTTTTTGTCT 7553 36 100.0 39 .................................... TACCATTTCAGAGCTAATCATTTTTGTTTTTTCCTTTCT 7478 36 97.2 41 ......A............................. TTTAGTATTGATCGAACGACTCTTGAATCAGTTGATCTTCA 7401 36 97.2 44 ......A............................. AGAAGAATTTAACTAATTTCATCATTTACCTACTTTCTAGCAAG 7321 36 97.2 39 ......A............................. GCATAGCTTTTTGCATAATTAATTAGATTTTGCATTTCT 7246 36 100.0 36 .................................... CTGGCAGTTCGCTTCTCATCTTGTTGAGCCATTTGA 7174 36 97.2 44 .....................G.............. CGTGCGATTGCGTGAGCGTCCTTAAACATTTCTGACTTTTCCTT 7094 36 94.4 42 ......A..............G.............. CTCAGCAGCAGTCTTCTTGTCCTGCTTATAGGAGTCAGCAGT 7016 36 97.2 39 ......A............................. TCCGTCACGTAGGCGCCATGCTTACGGATAGCTGGCAAT 6941 36 80.6 0 ......A..A....................CCCT.A | ========== ====== ====== ====== ==================================== ================================================= ================== 40 36 99.0 39 GCTAAAGACTTATCTCCGCTAAAAGGAGACGAGAAC # Left flank : AGTAGTTTAAAGCTTCCGACTTTCATCGAAGGAGGCAAGTAATGGTTTTACTTTTGAGCTTTGACTTGCCTCGAAACACAAAAGAAGAAAGAAAAGAGGCTGCAGAGTATCGGAAAAGACTAGTGGAGCTGGGCTTTGATATGAAGCAATATAGTCTTTATGAACGAGAAGTTGAGTCAGAGGAAACAAGGAAGCACTTGATCAAGACTTTGAAAGAAGAAGTTCCAGATGATGGAATGATCACCTTGTACTTGTTGCCGAATGAAGTTAACGACAAACAAATTACGATTTTAGGTAGTGAAGTGACACTGTCGACCAACACAAACCCAAAGCTCATCGTAATTTAGTGGGTTGTATGGTAATATATACGTAGTTCTCATTTAGCTGGCAATTTGTCCAATTTTCGGGCAAAAGTTAAGCCATAGTCTGATCACTTGTCCTGATTATGGACATTGAAAATGGTAGATTTTGGCGAAATATCAATGATTGTTTGGTGGTCA # Right flank : AATGCAGAATAAAATTCTTTAAAGTCTGATGATTAAATTAGTTGTTTCTTATGCCAAATCGAGAAACATTACTGAGTAGGATGTTCATGTCTAAGTGTAAAATAGCTATTTTACTCCCCTTACTCTTTTTGACATCCTGCACCAAACCGCAAGCCCTTGATGACCAGAAGGCGGCAGTTAGCGAAAATGACTTGATTGTGGTTAATGAAGATCAGAGTGCCTGAGTGACCGGATCATCTGCTGCTTTGACCAAGCAGACGAGGATGGTTACGATGAATAAAATGATTGATGAAAAGCCAATCAAGCCTTATCTCGTTACTTTAAAGGTCAATAACAAAAAGCCCTACAAAAATTCAGAAGCTAGTGTCAAAGTCGTTAAAGATGGCAAACGCTATAAACTGGTTGGCAACTTCAAGCTCAAGAAGCCGAAAATTATCCGCTTTAGTGGGCAGGTGGGGGCCACAGCCTCTAAGGTTAAAAGTAAGGGCTATTACCAGCTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAAAGACTTATCTCCGCTAAAAGGAGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 35297-38254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CALZ01000079.1 Lactobacillus equicursoris 66c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 35297 33 97.0 34 ................................A ACCAGGCCGGAGTTCCAGCAGCCGAAGCAGACGC 35364 33 100.0 33 ................................. GGAATCATGAAAGCGTGAATGTGATCGGCACTA 35430 33 100.0 33 ................................. TTGAGCTTGTGGACCTTATGCCAGCGGATCCCG 35496 33 97.0 33 ................................G CTCTGCTCCCGGAGCGTCACGGCGTAAGGCCTC 35562 33 97.0 33 ................................A GTCGCCTGCGAAACCATATTCGTAAAGAAGGCA 35628 33 100.0 32 ................................. GTATTAGTAACTGAATGATTAGTTGTATTAGT 35693 33 100.0 33 ................................. TGAGCCTTGAGCTGATCCATAAGCCCTGTCTAG 35759 33 97.0 34 ................................C GCAGTCGCATGATAGGACTTACCAGAGCCTACAA 35826 33 97.0 33 ................................C GCAGAGTTCTTTCTTTTGCGACAGCTTCTTCGC 35892 33 97.0 35 ................................G AAGAAGACCTCTACGCAGAGGCCAAGGCCAGCGCT 35960 33 100.0 32 ................................. TCAAACGCCTTCGCTCAGCGGTGATTCTCTTT 36025 33 97.0 33 ................................A GCTCAATGCCAAAAGTGTTTTCTAGTTCTGAAA 36091 33 100.0 32 ................................. ATTTAGTGATCGTTACAAACTCGTCTGGGATC 36156 33 97.0 37 ................................A ACTGGACTTTTGCTGTCGTCGCAAGCGATGCCGACTC 36226 33 100.0 33 ................................. CTTTATGAACGTTCGAATCGGAAACGCCGACCG 36292 33 97.0 34 ................................C AATAAGGGCCAAAGCTCAAAACAAACCGGCTATC 36359 33 100.0 35 ................................. GGTTGCTTTTCGTACAAAGTAGTTGAGCTGTTTGA 36427 33 97.0 33 ................................G GGCTTACTCAGGGAATTACAGAAACCGAGCAAT 36493 33 100.0 32 ................................. GGCATGTTGGCTGCCAGCTTTGCCATTAAAAA 36558 33 97.0 34 ................................A GGTCTACCTGGGTCAGGATGAAAACGGAAAGTCC 36625 33 100.0 33 ................................. CAATATCCTAAGGATTTCGAGTTAGCGGTTGTC 36691 33 97.0 34 ................................G CCAATTCTACAGATCTAAAAAAAGCGTATCCTAA 36758 33 97.0 35 ................................A AATGGAATCTACATTAAGGCTCCTGAGCAAGCAAA 36826 33 97.0 34 ................................A TCTCAACCGCTTCGGGGACGGCACTAGACCGCTT 36893 33 97.0 37 ................................A GACAGCAAACAAGCTGACGGATGAGTGGCTGGCCAAG 36963 33 97.0 33 ................................A GCTGGTAGACCGTAAGGTCAGAGTAGTCTTGAT 37029 33 100.0 33 ................................. TTGTCCAAACTTCTTTAACGACGCCAAGCAAGC 37095 33 97.0 36 ................................G CCTTTGAGGTCAACTTTGCCAACGCCTCAACCCCGC 37164 33 97.0 32 ................................A CCGTAAGTGACAGCACCGTGCTTTTCATCCCA 37229 33 97.0 33 ................................A TGCGAGATGAAAACATTGTTAGCGAAACTGACG 37295 33 100.0 34 ................................. TGTACTTCTTAATAAACGAGGTGAAAACGTGATC 37362 33 100.0 34 ................................. TTGTTGGAACGGTCAATTTGGTGATCGATACCTT 37429 33 100.0 32 ................................. CAAGGGGGGTACTACGACACCCCCCTATGTGA 37494 33 97.0 32 ................................A AAAAGGTGGCTCAGTCATTGTTATCATGACCA 37559 33 100.0 35 ................................. AACTGCGATATATACCGGTATGAGAATTGGCGAAA 37627 33 97.0 32 ................................C GAAGTCAACTTCGCAAACGCGTCAACGCCGCA 37692 33 100.0 33 ................................. CCAGAAACTCTGAAGAAGAACAATCGAGTGATT 37758 33 100.0 33 ................................. TGACCGTGGCTTTGACCCATACTTTTTTATATT 37824 33 100.0 32 ................................. TTTTACCACTGATTTTAGGATCACCAGTAAGC 37889 33 100.0 34 ................................. TGTACTTCTTAATAAACGAGGTGAAAACGTGATC 37956 33 97.0 33 ................................A GCCCGTGCTGGCCCTTGCTTACTTGCCGGCCTT 38022 33 97.0 34 ................................A TCAGACAGCTTGTATGTCACTAATAGTGCTGGGA 38089 33 97.0 32 ................................G GCAACGAACGAGTATCCGGTTTTGGCTATCAC 38154 33 100.0 35 ................................. GTATCATAGCGGACGACTTTAACGTTGGTCCGTCC 38222 33 93.9 0 ........................G.......A | ========== ====== ====== ====== ================================= ===================================== ================== 45 33 98.3 34 GTCGCACCCCTTGAGGGTGCGTGGATTGAAATT # Left flank : TAGACGCATATCCTCCTTTTTTCTGGAAGTAGGTAATAGCAATGATGATGGTTATTGTCAGCTATGATGTTAATACTGAAACTGCTGGAGGTAGAAGAAGGTTGAGACATGTGGCAAAGATTTGCTCAAATTACGGTCAGAGAATTCAGAATTCTGTATTTGAGTGCTTTGTTGATTCTACTAAGCTAGAACAGTTGAAAGAGGAACTGCTTGCAGAGTATGATGAAGAGAGGGATAGTTTGTATTTCTTTCGGATTGGGAAGAAGTATGAAAACAAAGTTGATTCATATGGAAATAAAAGCATTATAGATGTCGACAAACCTGTCGTTCTTTAATGTTGGAGGTGCGAGTCCTAAGCGCACAGCTTTTATTTAGGGATTCGCACCATTTTTTAGACGAATTATGGTCAAAATTGACGGTAATTTGTCTGTTCATGTATTTATATACATGGACAAGCCCAACATATAGATAAAGTGGGTTCCACTTTGCTTTATGTTGCG # Right flank : ATTGCACAGGACATGCGCATGCATGACCGACATATTTGTAAGTAAATAAAAACGGATCTACATTTGCAGATCCGTTTTTTGAATAATATAAGGAGAGTACAGGATTTGAACCTGCGCGCCGGTATGAACCGGTTCGGCGGATTTCGAGTCCGCTGCATTACCACTCTGCCAACTCTCCGGCACTCTTAATATTATAACGTAAATACGAGCTAAGTGGAAGAGAAAACGGTATTTCAACCCGATAAATATGTTAGAGGATATGTAAGTACATCTTCCTCAAAATAATACTCTCTGGTATCGAATCATCAAATACTGGGCGAAAATTAACGCCAAGAAGCAGAAGGAATGAAAAAACCGATCTGCTTACGCAAATCGGTTTTTTTTATTTATTTTCTCTGTCTACTTGACAAGGGCCGTATCACAAGGGTAAGCTTTTTCACATCCAATTTTATTCTTCCACAATACCATCGTTAGCCAGGCTCTGCTTCGTCTTCCACTGG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTTGAGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.40,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3901-4846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CALZ01000068.1 Lactobacillus equicursoris 66c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3901 36 100.0 30 .................................... AGTGGTGCGGATACCTTCTACGGCAATTAC 3967 36 100.0 30 .................................... AGGACCTGGCTAGAGACCTTAACAACATCA 4033 36 100.0 30 .................................... TGAAGCAAACTAATGTGATGGTTCGCGACA 4099 36 100.0 30 .................................... TCAAGTTCAGCAGCCTTCGTCTGAGCCTTC 4165 36 100.0 30 .................................... CCGACTGGGGCAAGGACCTTGCTGATGACC 4231 36 100.0 30 .................................... TGGCGCTTACACAAGGGGCGGCCAAAGTTG 4297 36 100.0 30 .................................... GGTCTTGCTGGTCAACTTGTTGGTGTCTCT 4363 36 100.0 30 .................................... TAACGCCAAGATAGTAATCTGGCATGTAGT 4429 36 100.0 30 .................................... TTTAGGGCTTCTAACCATCTATAAACGCCT 4495 36 100.0 30 .................................... AGTTTATAGCGATCAGCAGGTGTCATAGCG 4561 36 100.0 30 .................................... CACAAGTCCTCCGATTACTTACAATCACTT 4627 36 100.0 30 .................................... CTTTATTATTTAAAGCGTCAATTTCATCTT 4693 36 97.2 16 ...................................A AAGATATTGAGCTGAG Deletion [4745] 4745 36 97.2 30 ..........................A......... AGACACAAGAAAAGAGTACTAAATGTACGC 4811 36 97.2 0 ..................................C. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.4 29 GTTTTAGAAGGTAGTCTATTCAATAAGGTTTAACTC # Left flank : TTAGCGAATCCTTGTTTCAAAAGTATATGACTAAAGTAACTAACTATGTGGTAGAAGACCTTAGTGAAGATGGACGAAATAGAATTATTACGCTCTATCGTGACCTGCTGAATGCAGTTCAGGACGAACTCTTTATGGAGGATCTTCCATTGGCAATAAATTTTGATACTGACTTGAAGAAACTGATCAAATTTGGAGGAATTCATTTTGATAAATCTCTGGCTACAAATCCATATGGTATAATTGAAACGGTACTTAGGATACATGATAGATTAGGTCTTAAGTCCATAGTTGCTTTTAGTAATGTAGCTCATTACTTGGATAAGCAACAGTTGAATGAACTTTCTAAATTATGTCAAGAATTAAATAAAGCAGTCATTTTGATCGAATTTTGCAGCCAGAATGATCAATCAGTATATCGGGATGCAAAGTTCAATTATATTGACGAGGACCTTGTTGACTGGTATTAACTCAGATTAAAACCTTGTTAAAAAACAACG # Right flank : CAGGTCAAGGGACCAAACACAATGTCATTAATTTAAGGGATTGATATTGACCATAAAGTGGTTCTAACTTAAACTTCCCACACCAAAAAGAGCTATGAAGCCTTGAAAACTCAATAGTTTAGTCAGTAAATATTCAATTAAGCTACTAGTGATGGCGACAATGCCTCCTGCATGTACTTCGGGAGGCGGGAAATGAAAGCACTGGTAAATCTTTCCATCTGCTCTTCGGTCGGTTGGAAGATTTCTTTCACGCTTTCGAACATGACTTCCACCAGGATCTGGAGAGAGTGATGAAAAGTGATGTCCGCAAGCTCGTTTATCATGTAGTAAAAAAGCTCGCCTATTGTCCTGTCATCTTCATCATCTCGTTTGGAAACTGATATGAACATATAGCGCAGAAAGACAAAAGCCGTATGAGCTGTCAGTGCATCATATGAGAGGCCATGGTATTCAGTGTCTAGCTTCAAGAAGCTCTTGCAGAAGACCTCGATGTCCCATCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTAGTCTATTCAATAAGGTTTAACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //