Array 1 47-1173 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAGS01000520.1 Nitrolancea hollandica Lb, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 100.0 32 ............................. TGACCTGTTCACAGGCGCGAGCGTGTGCTTTG 108 29 100.0 32 ............................. AGGAAGCCTCGATCTGCCAGACCGAGCCCTTC 169 29 100.0 32 ............................. GACAGCGCGTCACCCAAGGCGCCAAACACCGC 230 29 100.0 32 ............................. CACCCGATACCTGCCCGGTGGCCGAAGCGCTG 291 29 100.0 32 ............................. AACTACCTCATCCCCGACTGGACTGAGATCCA 352 29 100.0 32 ............................. GGGTTCATCGAGCGCCACGGCGATGACATCCT 413 29 100.0 32 ............................. AACCGGAACGGCGTGGCCGGGTGCGGGGTGAA 474 29 96.6 32 ............................C GCTCGACGACTTAGTAAAAGCGTCTATCGCCG 535 29 100.0 32 ............................. GATGCAGCGTTTATTAGAGAAGAAGGGGAAGA 596 29 100.0 32 ............................. ACCACCGATGCCGCACTTGCGGATGAGATGAA 657 29 100.0 32 ............................. CCGTGGTGGCGGGGCGCTGGGGTGCGGGCGGA 718 29 100.0 32 ............................. ACTGTTATTCTATACGGGCGTAATGGTGCACT 779 29 100.0 32 ............................. CGCTTCGCGTCGGTGTCCACGTCGCCGTTTGC 840 29 100.0 32 ............................. GTGAGGCCCACCCTTGGGGACCGGGCGGGCCT 901 29 100.0 32 ............................. GTATCATAAGACACGTAAGCGGCGTTGGGATT 962 29 100.0 32 ............................. CTGAGGGAGATCACGGTTGACGACGATGGGGA 1023 29 100.0 32 ............................. TCTGGATCTCGCAATGCACGTAGAGAGGGGAA 1084 29 100.0 32 ............................. GAGCTGGCCTGGCTCCTGGGTGAGCTGAAGGC 1145 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGGTCCCCACGCGTGTGGGGGTGAACCG # Left flank : GTGGGGGTGAACCGCTATGCAACGGCCGAAAGTCGGTGATCCGCACG # Right flank : GGACACGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2729-3306 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAGS01000519.1 Nitrolancea hollandica Lb, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2729 29 100.0 32 ............................. CCGTCCGATCTTGGCTACTCCGATGCCGGCTA 2790 29 100.0 32 ............................. CTCGACGTCTTCCTGGACCCCAGCGAGGCCAC 2851 29 100.0 32 ............................. GCCGCCGCGAGTGGCACCGGTGCCGGCCCGCT 2912 29 100.0 32 ............................. ACACGGCGCCACGTCGGGCCGGCCCTCCCGGC 2973 29 100.0 32 ............................. CTGTGCGGCGTGCTGGTGACCGGCTCGGTGAT 3034 29 100.0 32 ............................. CAGTGGCTGACCGAGAACGATGCCAGCGTGGA 3095 29 100.0 32 ............................. CCCAGCTTCGGGCACTGGCACTGCCGCCTGCC 3156 29 100.0 32 ............................. AGCTTGTGGATCAGCTCCTTGGCCATTCCGGC 3217 29 96.6 32 ............................A GACTTGGGTCGGCATCCGGCAGTTCGGCTTGC 3278 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGGTCCCCACGCGTGTGGGGGTGAACCG # Left flank : TCTGCCGGGATGCATTTCGTGAGGGACGCCTGCTGCAACGGATCGTCGCGGACATTGACCGTGCGTTGTTCGCCGACGGTGGGCCAGTCGGTAGCGGCATCGCTGACTTCGACAGCGATATGGCGTTGCCGGGCGGCATTTGGGGTCCTGAGGCGATAGTGCAAGGTGGGGTGAACCGGGGGAACGAACTGGAGGAGGATGAGTAGCGATGGTAGTCATGATCCTGGAACGGGTGCCTCCGAGCTTGCGCGGAGAACTAACCCGTTGGATGCTCGAACTCAAAGCCGGTGTGTTTGTCGGGACGATATCGGCCATGGTGCGGGACAAGCTATGGGAAAAGGCCTGCAAGGGCCTTCGGGATGGTGGCGGTATGCTGATCTTCAGCTCCAACACCGAGCAAGGGTATGCGATTCAGCTCTTCGGGATGCCGGCGCGATCAATTCGAGACTTCGAGGGTCTTTTTCTGGTGAGAGTGCCGGAAGAATAAGGAATTTCCCAGT # Right flank : CGAGTGAGCGGGTTTATTGGGGAGTGGATCAGGTGGTCCCCACGCGTGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44-1424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAGS01000587.1 Nitrolancea hollandica Lb, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 44 29 100.0 32 ............................. GCCAGGTAGACGTAGGTATGGGTGGTGGACGC 105 29 100.0 32 ............................. ATCCACCGGCGCTGTGAAGGGCTGATGGCCGA 166 29 100.0 41 ............................. TTACCGATGCCGAGAGGAATGTCCAGGCAGCCGTCACCGAC 236 29 100.0 32 ............................. CGGGCGGGCAGCTCACGGCGGGCTCATCGGTC 297 29 100.0 32 ............................. GCTTCCCTCGCAACATAGGAGATGACCAATGG 358 29 100.0 32 ............................. CCGACGCGCTGATTGCCAAGCTCGAAACCCAG 419 29 100.0 32 ............................. GTATCCTCCATCCCCTTGATGAGAAGTGGCAG 480 29 100.0 32 ............................. CGATGTCCGGAAGACGGCCTACTGCTCCCGCG 541 29 100.0 32 ............................. GCTTCTCTGCGCGAGGAATATAGCGCGGAGCA 602 29 100.0 32 ............................. GGCGAAGGAGAGCGCGGCGTGACACAGAGCTA 663 29 96.6 32 ............................T TTCTGATACGCCGATCGACACGATCTGTAATC 724 29 100.0 32 ............................. CTGGCCGAGAAGCTTTCGCCCATGGCAGCGCC 785 29 100.0 32 ............................. GCGGTGGCGATGATCGTGGCGGCGGCCATTGG 846 29 100.0 32 ............................. CTGTTTGCCGACGATGCCTCGGGCACGGCGGG 907 29 100.0 32 ............................. GGATTGGGGAATGAGGCGGGCCTGGGTTGTGA 968 29 100.0 32 ............................. AAGTCATTGTAAGAGTTGAGGGCTTTGAACAG 1029 29 100.0 32 ............................. AAGTTGGTCCCGGCCGGGCAGACGATCACCGC 1090 29 100.0 32 ............................. AAGCCAACCTAGCCCTCCCGTTTGAGTTGTTG 1151 29 100.0 32 ............................. AAATTATCGGGTTAGGGGTCGCGGTCGTGGTG 1212 29 100.0 32 ............................. GTTGGGGTGTGGGGGATGATTCCGACAGAGCT 1273 29 100.0 32 ............................. AGTTATCTGGCTGCCTGGCCTGCGGTGCAGGT 1334 29 100.0 33 ............................. CAGAGCTTGGCGGCCTATCCGATACCGCCCTCC 1396 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 23 29 99.9 32 GTGGTCCCCACGCGTGTGGGGGTGAACCG # Left flank : GGGTGAACCGGGACACGGCATGATGCTCGTCTTCGATGAAGTCG # Right flank : AGGTAGGGGATGAGCCGGAAGCGGCAGATTTCGTGGTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3024-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAGS01000508.1 Nitrolancea hollandica Lb, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3023 29 100.0 32 ............................. CTCGTCCAGCACAACGCCGAGCGGTTCATCCG 2962 29 100.0 32 ............................. CCATATTCGGGCATCACGGACCAGGGGTTCGT 2901 29 100.0 32 ............................. TGCGCGGCTCACCAGCGGGTCCGCGACGTCAA 2840 29 100.0 32 ............................. CAGCAGCTCGCCAGCCAGGGCAAATACCCCGA 2779 29 100.0 32 ............................. CGCTTCGTGATGAACGGCAGCGGCCGGGATGC 2718 29 100.0 32 ............................. ATCCGTGAGCTAGGAGCCACCGCAAGGAACCC 2657 29 100.0 32 ............................. TAAGGTCGGAACCGAAACCCCTCGCGAGAACA 2596 29 100.0 32 ............................. CGGCTGGAGTCTGAGCGAGATCGTTACTACGC 2535 29 100.0 33 ............................. GACGTACCGTGCACGCACGCATCGCCGGACGGC 2473 29 100.0 32 ............................. GAGTAACGAATGCAACAGCGATACGCGTGGAA 2412 29 100.0 32 ............................. ATCGCGACGGCGATCAGGCCGATGACGATAGC 2351 29 100.0 32 ............................. ACGCGGTACCGCTCGCGAACTCCGACGCCGAG 2290 29 100.0 32 ............................. GCGTGGTAGTAGGACGCGATCTCATACGTAAT 2229 29 100.0 32 ............................. GTCGCGGAATCCCTGGCCTTGCGCCGGGCCTT 2168 29 100.0 32 ............................. CATGTGTTCGTCCTTCGAGCGAGTGCACCGGC 2107 29 100.0 32 ............................. CCCATGCCACCTCCTAGCGCGTCAGCAACACG 2046 29 100.0 32 ............................. TCCATCGCGTCTTCGAGCTCGCTCATACCACC 1985 29 100.0 32 ............................. GGCGGATCAAAGACGCGCGGCTGTTCTATTTC 1924 29 100.0 32 ............................. CCTCGATTTGCGCTGGCGTCAATGGCTGGCCG 1863 29 100.0 32 ............................. AGCGTCCAGCTGAGGCTCATGACAGCACCACC 1802 29 100.0 32 ............................. AGGGGACCGAACTCGGGGTCGCGCCGGCCGGC 1741 29 100.0 32 ............................. CGTCGGCGCGCCACGCCGCGACCGGGGATCTA 1680 29 100.0 32 ............................. CAACGAGTCGAGCCACACCCACACCGTTCCGC 1619 29 100.0 32 ............................. TTCCCGCTCGGCGGCCATCTCACGCAGGTGGA 1558 29 100.0 32 ............................. GAGATGCATCGATGAGCACCGCCACGCATCTC 1497 29 100.0 32 ............................. TAATGTCAATCAAGGTCATTGACGGCGAAACC 1436 29 100.0 32 ............................. GGGGGCAACTGCTTCACGTGCGCCGGGTTGTG 1375 29 100.0 32 ............................. ATGCCGCCGCGCCCGGCCTTCCGGCTGACCAC 1314 29 100.0 32 ............................. GAATCATCAACTCGATTGACCCGAAACCCCTC 1253 29 100.0 32 ............................. GTTGCGGCCCGAGCCGTGCCACTTGACCCGCT 1192 29 100.0 32 ............................. AACTTGCAGCGGCTGATGAGCTGCGGGATCGC 1131 29 100.0 32 ............................. TCGTAGTCGTCACGAGCGTTCGTGTACTCCCC 1070 29 100.0 32 ............................. GTCAGGAAGCCGCGTTCGTCGGTGGCGAAGCT 1009 29 100.0 32 ............................. AAGCTGGGCTTGAGTGTGCGTAGTCGGGCCAT 948 29 100.0 32 ............................. TGACCGAAGGTGTCACCCATGGCGCATCCGGT 887 29 100.0 32 ............................. CGTCCTCGGGCGCTGGTTTCCAGCCCAACATA 826 29 100.0 32 ............................. GCGCTGAACCGGTGGAGCGCGATCCGAGAAGC 765 29 100.0 32 ............................. AGTGCATGGGGTTCGTGCGGAATAACAATGGG 704 29 100.0 32 ............................. TCTTTTCAATGCGTGGCTGTGGGGAGACGCCA 643 29 100.0 32 ............................. ATATGGTGGAAGCACTCAATGACAAGCAGCGA 582 29 100.0 32 ............................. TTCCAGGACGTCGGCGGGGACCGGGGGCAGTC 521 29 100.0 32 ............................. ACACGCGGCCTCGATCACATCTCGCGGCTACC 460 29 96.6 32 ............................C CGCGTCGGCGGTCTCGACCAGGACCAGGAGCT 399 29 100.0 32 ............................. TGCTCGCGCACGGTGTCAACCAGCCCGGTCAC 338 29 100.0 32 ............................. CTGTCCACCTGATCGGCGTTGGCCGAGGCCGG 277 29 100.0 33 ............................. GTCACGGTGGCGTTGAATTTCAAGCCGCCGGTC 215 29 100.0 32 ............................. ACGGTTACGACCACGTTCGTGAAATCCGATGG 154 29 100.0 32 ............................. CTCGAATCCGACATCCGGGCGCAGTTCCAGTC 93 29 100.0 32 ............................. ATCAGCGGCGTAGCCCCGCTGATCCTTCCGTT 32 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.9 32 GTGGTCCCCACGCGTGTGGGGGTGAACCG # Left flank : CCGTTCCATTGCGACGAAGACGGTGG # Right flank : GATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14-469 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAGS01000706.1 Nitrolancea hollandica Lb, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 ............................. CAGACCAAACAGCCGAAGCAGGGGAAGGAGGC 75 29 100.0 32 ............................. AGCCAGAACCGGGTCCAGGATGTGAGCAAGAT 136 29 100.0 32 ............................. AGGCGACGGCGCTACAGATCAATCCGGACATC 197 29 100.0 32 ............................. CGAAACTTGGCCGATTGCTGCACCCGGATGAG 258 29 100.0 32 ............................. GCTGCCCCGACGCCCTGGACCGCCGCGAAGCC 319 29 100.0 32 ............................. ATCCCGTAGACCAGCGCGTGGGTATGTGGTGG 380 29 100.0 32 ............................. GACGGCCTCCAGGCGGCAAGCTCGATCCACCT 441 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGGTCCCCACGCGTGTGGGGGTGAACCG # Left flank : TTGAGATCGAGCGG # Right flank : CGAGCCAGGACTACGTCTACCTCCGGCAGGCCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4980-4828 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAGS01000507.1 Nitrolancea hollandica Lb, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4979 29 96.6 33 .........G................... CCGACAGCTTGTCGTGTTGGGTGCGCCTGCGGC 4917 29 100.0 32 ............................. TCGTAGTCCGGCGTGCCACTATCCGTGACCTG 4856 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 98.9 33 GTCGTCCCCACACGCGTGGGGGTGAACCG # Left flank : AACCCGGCCGGGCTACGTGCTCTGGCCGACGATCAT # Right flank : ATCTGGAGGTGAACTCCATCAGGTGGATTGGCAGTTGCCGTGAATCACCGGTTCAAGCCTTCCTCGGCCAATCCATTTGGATAAGATCAGCGATTCCCCTCACTTTTCCCGTAATTGACTGAAAAGTGCCTCTCCGGTGACTCAAAAGTGACTCTCCGGTGACTGTCACGCTCCAGACTGGGCACCAGCGACTTGCTGCGAGCTCCACTGTCTGGAGGCAACCGATGCCGAATCCCCGTTCAAACACTGCTGAAGAATCCATGTGCGCTCATTCTCTTGAGATGAGCGTGCGATGATGAGCGCTGCGCGCGTCGTAGCCATTCTCATCACGGCGGTAGTGCTCGGTGTCAGCGCCTACCTAGCAACTGCTACTGCGGTCGCGGCGGTCGATTCGTCCTCTGAGTCGCTGCCGACTCAGATGGTAACGCCGACCGAAGCCCCGCCTCCGGAAGCGGCTCCCCATACGACTTCTCCAATGGCATCGCCATCGGCGAGTCCGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCACACGCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 480-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAGS01000699.1 Nitrolancea hollandica Lb, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479 29 100.0 32 ............................. CCCTGGCCGATGAATCGGTTGGCGCCATCGTG 418 29 100.0 32 ............................. CAATCAACGTTGCCTGCATCCGCATGCAACGC 357 29 100.0 32 ............................. CCGATCGCCATGTGGGGACGCATGCCGGACCT 296 29 100.0 32 ............................. AGATCCTGGACGTGCCAGTCAGCCCGCTCGGC 235 29 100.0 32 ............................. TTATGGTCAAGTGCGCTAGATAAGAGGGTGTG 174 29 100.0 32 ............................. ATCGAACTCATCAAACGGACCTACTTCAAGAA 113 29 100.0 32 ............................. GGCATCCACAGGCAGGCCGTCGGCGATTCAAA 52 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGGTCCCCACGCGTGTGGGGGTGAACCG # Left flank : GAACCGCGGACCCGTTCCCCGCCTTTGCCGTCACGTAC # Right flank : GTGGGTCGGAGATCCGAAGCTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 532-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAGS01000681.1 Nitrolancea hollandica Lb, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 531 29 100.0 32 ............................. GCACCCCGGCGCCGGGCCATCCGGTGTACGAG 470 29 100.0 32 ............................. CAATGGAGAAACCAGAGCGCGACCCGCGCCGC 409 29 100.0 32 ............................. CAACCTCCTCATCCCGAATGCGCCAAACAGAC 348 29 100.0 32 ............................. ACGACTGGAATCGTTCACGCTCATGTGCCCCC 287 29 100.0 32 ............................. TCAAGTGGGGCGCCTAATCCATTCGCCACGAT 226 29 100.0 32 ............................. ATGGAGGCGGTCAGCGGCCAGGGGAAGCCGGT 165 29 100.0 32 ............................. GGGAGGGCGAGCTCTTCCGTGGCCTGGTGGAC 104 29 100.0 31 ............................. AACTTGACGACGCCATTCTTGAGATCGAGCG 44 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGGTCCCCACGCGTGTGGGGGTGAACCG # Left flank : GCTAGGACGGACTCCCAGCCGCCGATGCCG # Right flank : GACGACTGGAATCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [13.3-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42-558 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAGS01000666.1 Nitrolancea hollandica Lb, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42 29 100.0 32 ............................. AACGCGAGTTTGTGCCGCTGCGCCGCGGTACC 103 29 100.0 32 ............................. CTGGCTTCGCTCACGCCACCCCTCCCCGCAGC 164 29 100.0 32 ............................. GCGATTGCCTGGCGTGCTCGGCTGCATGCGGA 225 29 100.0 32 ............................. AAGCGCAGACGCGGGTCTTCTAGGTCGATCTT 286 29 96.6 32 ............................T TGGACAGCCGAACAATTAGGCATCGATCCCTC 347 29 96.6 32 ............................A CTATCGCCGCGCTCCCGCGCGAGATCAAGCTC 408 29 100.0 32 ............................. CTGGCGCCGGCAGCCAAGGCGCGTGACGGCTA 469 29 100.0 32 ............................. CACAATCGCTGGACCTCATCACCAAGGGCTTC 530 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGGTCCCCACGCGTGTGGGGGTGAACCG # Left flank : GGTGAACCGCCCAGCGCCCAAAAGCAGATCGTGCGCGACTGG # Right flank : GATAGGGGATGACGAAACTCGCTTATGGGAACGTGGTCCCCACGCGTGTGGGGGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37-735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAGS01000640.1 Nitrolancea hollandica Lb, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37 29 100.0 32 ............................. CTCTGGGAGTGGTGGCAGTCCACGGCTCGGAC 98 29 100.0 32 ............................. AGCGGGGCAGCGGCGAACTCCAACCGGGTGGA 159 29 100.0 32 ............................. AATTTGCGCGCCAATGCGCCGTGGAGTAACCC 220 29 100.0 32 ............................. GATCTCTCGATCGAGGGGGATAACGCGCTGAA 281 29 100.0 32 ............................. CAGAGAACGAACAGAACAAGCCGGCGGCGTAC 342 29 100.0 32 ............................. ACGTCGGTGGCGTGAGCGGCATCCTTGGTTCC 403 29 100.0 31 ............................. AAAGAGCCGCTCTCCAGCGGGGAGTCCCTAC 463 29 100.0 32 ............................. CACGCTTGCCGCTGCGCTCCTCGCGGCGCGTT 524 29 100.0 32 ............................. TTGAGGGGGGAGTGATGAGTGAAGATACCCAA 585 29 100.0 32 ............................. GCGACCGAAAGCGTTGCGGCCAAGGCGGGCGT 646 29 100.0 32 ............................. GCCAAGCTGCGGGGACTGCGCGATGCCAACGG 707 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGGTCCCCACGCGTGTGGGGGTGAACCG # Left flank : ACCGGGGCTGCACCGCGAAACGAAACGTGCCGCCGTG # Right flank : GCCAAGCTGCGGGGACTGCGCGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //