Array 1 35388-38145 **** Predicted by CRISPRDetect 2.4 *** >NZ_UPHT01000066.1 Mycobacterium attenuatum strain MK41 isolate MK41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 35388 38 100.0 35 ...................................... ATCGTCTTGGATCTGGTCGATCTGCTGGCGCAGGT 35461 38 97.4 36 C..................................... GTAGAGACCATGCGCCTAACGGCCACGCAGATCGCT 35535 38 100.0 34 ...................................... CAGCAACACCCGATCCGAGCGCGGATTGCCGCCC 35607 38 100.0 37 ...................................... CCGGCGGAGGATAAGCTACTTCCCGGCGGAGGATAAG 35682 38 100.0 35 ...................................... GGGATTGGTGTCGGTGGCGGGGTTTTCAGCCAGAA 35755 38 97.4 34 A..................................... TTGATGGTCTTGGGCGCGACGACCCGCCCGGTTT 35827 38 97.4 37 T..................................... GTCGAAATCCGTTGGCGTACCAGTGATCGTCCAGCTG 35902 38 100.0 35 ...................................... ACCAACTCCGGCGGCTCCCTACCCACGGGCTTGAG 35975 38 100.0 35 ...................................... CAGTAACACCCGGTCCGGGCGCGGATTGCCGCCCG 36048 38 97.4 39 C..................................... AGGGCAGCATTTTCGGGCAGCTGTTCGCGCCGCTACTCA 36125 38 97.4 35 A..................................... ACTGGCGCGACGTCGATAAGCCGGCCGGAGATGAG 36198 38 100.0 38 ...................................... GTCAACACGCTGATGCTGAGCATCCAAAGTTAGGAAGC 36274 38 100.0 36 ...................................... ATCAGCCAGCCTTAAACCTGCGGCCTCAACATAACG 36348 38 100.0 34 ...................................... TGGTCTGACGGATTTTGAGCAAACATTGCTGACT 36420 38 97.4 34 A..................................... TTGTAGCCCAGCGCAAGTTGCGGGTGGGCGCAAA 36492 38 97.4 35 A..................................... CCGAAATGGGGCCGGTTGTGTGGCCGGCCTACGAA 36565 38 100.0 35 ...................................... GTTTATCCCGGACCGCCGCGCCGACAAGGACACCT 36638 38 97.4 34 A..................................... TTCCGCAATGTCGGCGATGTCGCCGCCGATCTAG 36710 38 97.4 37 C..................................... ATCAGCCGTGCGACGTTGGGTGTCGAAGAGCCTCCTT 36785 38 100.0 36 ...................................... CCATGCCCTGCCGTGCCTCGCCTGCCATGCCTTGCC 36859 38 100.0 35 ...................................... TCTGGGTTATTCAGTCGCCCGTATCCAACGGTGAT 36932 38 100.0 34 ...................................... TCCTCATCAGACGCCACCGCACTGATCCCCATGA 37004 38 100.0 37 ...................................... AACGAGTACTGGGTGTTGAGCCCCAATAGTCAAAACC 37079 38 100.0 34 ...................................... GGGAGTGATAGCCTGCCACGACGGGCTCAGAAGC 37151 38 97.4 37 C..................................... CTGGTCTATCTGGTCTATCTCAGCGATGCCGATCTCG 37226 38 100.0 36 ...................................... TTACCATTACACGATCAGTCAGGCCGATGACGGTGG 37300 38 97.4 38 T..................................... ATGGGCTGCGAGCAGACTCTGGTGGGCGTCGAGGTCGA 37376 38 100.0 35 ...................................... ACGTCGGACTTGACGGCGTTGGTGTGGGTGTTCCC 37449 38 100.0 35 ...................................... CAAAAACGCTCCACCGAGGGTTCCGTTCACCCCAC 37522 38 97.4 38 T..................................... CGGCGCGAGCCTCTTCCGCGAGCCATTCCGGCGGTTCA 37598 38 100.0 36 ...................................... CTGGTGACACGCCGAAGATCGGTTCCGGCACGCTCA 37672 38 97.4 36 T..................................... TTGATGGTCTTGGGCGCGACGACCCGCCCGGTTTTC 37746 38 100.0 35 ...................................... GCTTTTGCGGAGCGGAGTACCTCATCCCTCGTGGC 37819 38 97.4 33 T..................................... GCTGGTGCTCACTCCACCAAAGACGCGCGCAGG 37890 38 97.4 34 C..................................... AGTCGAAGCAAGCAACACCAGCGGCGGCGCCGTG 37962 38 100.0 36 ...................................... GCTATGATTCGCAGGCTACGCAGATTCGAGCACGCT 38036 38 92.1 34 C....G..................G............. AAGGGGTACTGGGCGACACCGAATCTCATTTATT 38108 38 92.1 0 ............A........C...............G | ========== ====== ====== ====== ====================================== ======================================= ================== 38 38 98.6 36 GGCGGCGTCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Left flank : ACTGCAGGCGCTACTGCTTGCACGCCACCTTCGTGGCGATCTGACGCATTACTTCCCATATCGAACGACAGGGCGCTGAGATGGAAATATTGGTGGCCTACGACATCAGCACGACGACACCTGAGGGGGAGAGGCGTCTTCGTGAAGTCGCGAAAGTCTGCGAGGGATACGGTCAGCGTGTCCAAAAGTCAGTGTTTGAATGCCAGCTCGAAATGCGCGAAGTCCGTTTGCTAATGCATGACCTTGAGAAGGTGATCGACCTGAAGTCCGACCGGGTAGCCGTCTACCGACTGCGTGAGCCATACCGTCGGTACGTGGTGACTCTTGGGCGTGGACCAGAGGTCGACTGGCGGCACCCAGTCATCTTGTGAAGGGGCGGACCCGAGTTGGACATGCGACCCGTAGCACATCCGCCCGAGGATTTGGGCGCCCTGAGCGCAGAACGGTTCATTGATAAGTTGATGATTGTCGCGGTCGCCGAAAAATGGCTGGTCGCGAAG # Right flank : ATCAAGCGGCGCGAACGCGTCGAAGTAGAAGTCGTCGGCCTCGCACGCGGCGGCGACCAGCGCATCGGAATGCCAACCCGCACCGGCGAATCCGGCCGCCAGCAGATCGCGCTGGACGCCGATGTCACCGCGGTCGTAACTCAATGTTCCGAACGAAACGCTAACCCGGATTTTTCGCGGAATACCGGTGTCGTTGGGTGTTGATACGCGAAAGTGCCTGTCCTACAAGGAATGATTGGATTTGTCTAGGATTCAATCGTTCCAGTGGGAAGGCACCTCGCAGGTGAACAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGTCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //